Evidence map›Paper›PMID 34535070›Full record

ArticleBMC plant biology2021

Identification of C3H2C3-type RING E3 ubiquitin ligase in grapevine and characterization of drought resistance function of VyRCHC114.

Yihe Yu, Shengdi Yang, Lu Bian, Keke Yu, Xiangxuan Meng, Guohai Zhang, Weirong Xu, Wenkong Yao, Dalong Guo

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

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  4. The Molecular Mechanism of Yellow Mushroom (Frontiers in microbiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Yihe YuCollege of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang, 471023, Henan Province, China.
Shengdi YangCollege of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang, 471023, Henan Province, China.
Lu BianCollege of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang, 471023, Henan Province, China.
Keke YuCollege of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang, 471023, Henan Province, China.
Xiangxuan MengCollege of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang, 471023, Henan Province, China.
Guohai ZhangCollege of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang, 471023, Henan Province, China.
Weirong XuSchool of Wine, Ningxia University, Yinchuan, 750021, Ningxia Province, China.
Wenkong YaoSchool of Wine, Ningxia University, Yinchuan, 750021, Ningxia Province, China.
Dalong GuoCollege of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang, 471023, Henan Province, China. guodalong@haust.edu.cn.
Henan University of Science and Technology · CNNingxia University · CN

Funding

Henan University of Science and Technology 2015TTD003National Natural Science Foundation of China 31701893National Natural Science Foundation of China U1504321Zhongyuan Science and Technology Innovation Leaders 194200510007
6 · The paper itself

Abstract

backgroundRING is one of the largest E3 ubiquitin ligase families and C3H2C3 type is the largest subfamily of RING, which plays an important role in plant growth and development, and growth and responses to biotic and abiotic stresses.

resultsA total of 143 RING C3H2C3-type genes (RCHCs) were discovered from the grapevine genome and separated into groups (I-XI) according to their phylogenetic analysis, and these genes named according to their positions on chromosomes. Gene replication analysis showed that tandem duplications play a predominant role in the expansion of VvRCHCs family together. Structural analysis showed that most VvRCHCs (67.13 %) had no more than 2 introns, while genes clustered together based on phylogenetic trees had similar motifs and evolutionarily conserved structures. Cis-acting element analysis showed the diversity of VvRCHCs regulation. The expression profiles of eight DEGs in RNA-Seq after drought stress were like the results of qRT-PCR analysis. In vitro ubiquitin experiment showed that VyRCHC114 had E3 ubiquitin ligase activity, overexpression of VyRCHC114 in Arabidopsis improved drought tolerance. Moreover, the transgenic plant survival rate increased by 30 %, accompanied by electrolyte leakage, chlorophyll content and the activities of SOD, POD, APX and CAT were changed. The quantitative expression of AtCOR15a, AtRD29A, AtERD15 and AtP5CS1 showed that they participated in the response to drought stress may be regulated by the expression of VyRCHC114.

conclusionsThis study provides valuable new information for the evolution of grapevine RCHCs and its relevance for studying the functional characteristics of grapevine VyRCHC114 genes under drought stress.

Indexed as

DroughtsArabidopsisArabidopsis ProteinsChromosome MappingDehydrationGene Expression Regulation, PlantGenome, PlantGlutamate-5-Semialdehyde DehydrogenaseMultienzyme ComplexesPhosphotransferases (Alcohol Group Acceptor)PhylogenyPlant ProteinsPlants, Genetically ModifiedPromoter Regions, GeneticProtein DomainsUbiquitin-Protein LigasesArabidopsis Proteinsdelta(1)-pyrroline-5-carboxylate synthetase, ArabidopsisERD15 protein, ArabidopsisGlutamate-5-Semialdehyde DehydrogenaseMultienzyme ComplexesPhosphotransferases (Alcohol Group Acceptor)Plant ProteinsRD29a protein, ArabidopsisUbiquitin-Protein LigasesDrought stressGrapevineOverexpressionRINGUbiquitin

Identifiers

PMID34535070
PMCPMC8447581
OpenAlexW3199499677

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.