Evidence map›Paper›PMID 34531387›Full record

ArticleNature communications2021

The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole.

Kara Martin, Katrin Schmidt, Andrew Toseland, Chris A Boulton, Kerrie Barry, Bánk Beszteri, Corina P D Brussaard, Alicia Clum, Chris G Daum, Emiley Eloe-Fadrosh and 23 more

Abstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors.

Kara Martin *School of Computing Sciences, University of East Anglia, Norwich Research Park, Norwich, UK.
Katrin Schmidt *School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, UK.
Andrew ToselandSchool of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, UK.ORCID http://orcid.org/0000-0002-6513-956X
Chris A BoultonGlobal Systems Institute, University of Exeter, Exeter, UK.ORCID http://orcid.org/0000-0001-7836-9391
Kerrie BarryU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Bánk BeszteriDepartment of Biology, University of Duisburg-Essen, Essen, Essen, Germany.ORCID http://orcid.org/0000-0002-6852-1588
Corina P D BrussaardRoyal Netherlands Institute for Sea Research, Texel, The Netherlands.
Alicia ClumU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Chris G DaumU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0003-3895-5892
Emiley Eloe-FadroshU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-8162-1276
Allison FongAlfred Wegener Institute for Polar and Marine Research, Bremerhaven, Germany.
Brian FosterU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Bryce FosterU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Michael GinzburgAlfred Wegener Institute for Polar and Marine Research, Bremerhaven, Germany.ORCID http://orcid.org/0000-0001-9348-6908
Marcel HuntemannU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-1284-3748
Natalia N IvanovaU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-5802-9485
Nikos C KyrpidesU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-6131-0462
Erika LindquistU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Supratim MukherjeeU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-6322-2271
Krishnaveni PalaniappanU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
T B K ReddyU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Mariam R RizkallahAlfred Wegener Institute for Polar and Marine Research, Bremerhaven, Germany.
Simon RouxU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Klaas TimmermansRoyal Netherlands Institute for Sea Research, Texel, The Netherlands.
Susannah G TringeU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0001-6479-8427
Willem H van de PollCentre for Isotope Research - Oceans, Energy and Sustainability Research Institute Groningen, Faculty of Science and Engineering, University of Groningen, AG Groningen, The Netherlands.ORCID http://orcid.org/0000-0003-4095-4338
Neha VargheseU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Klaus U ValentinAlfred Wegener Institute for Polar and Marine Research, Bremerhaven, Germany.
Timothy M LentonGlobal Systems Institute, University of Exeter, Exeter, UK.ORCID http://orcid.org/0000-0002-6725-7498
Igor V GrigorievU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-3136-8903
Richard M LeggettEarlham Institute, Norwich Research Park, Norwich, UK.ORCID http://orcid.org/0000-0003-3044-4297
Vincent MoultonSchool of Computing Sciences, University of East Anglia, Norwich Research Park, Norwich, UK.
Thomas MockSchool of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, UK. t.mock@uea.ac.uk.ORCID http://orcid.org/0000-0001-9604-0362

Funding

Biotechnology and Biological Sciences Research Council BB/CSP1720/1Biotechnology and Biological Sciences Research Council BBS/E/T/000PR9817
6 · The paper itself

Abstract

Eukaryotic phytoplankton are responsible for at least 20% of annual global carbon fixation. Their diversity and activity are shaped by interactions with prokaryotes as part of complex microbiomes. Although differences in their local species diversity have been estimated, we still have a limited understanding of environmental conditions responsible for compositional differences between local species communities on a large scale from pole to pole. Here, we show, based on pole-to-pole phytoplankton metatranscriptomes and microbial rDNA sequencing, that environmental differences between polar and non-polar upper oceans most strongly impact the large-scale spatial pattern of biodiversity and gene activity in algal microbiomes. The geographic differentiation of co-occurring microbes in algal microbiomes can be well explained by the latitudinal temperature gradient and associated break points in their beta diversity, with an average breakpoint at 14 °C ± 4.3, separating cold and warm upper oceans. As global warming impacts upper ocean temperatures, we project that break points of beta diversity move markedly pole-wards. Hence, abrupt regime shifts in algal microbiomes could be caused by anthropogenic climate change.

Indexed as

Genetic VariationAntarctic RegionsArctic RegionsBiodiversityCarbon CycleClimate ChangeGene OntologyGeographyGlobal WarmingMicroalgaeMicrobiotaOceans and SeasPhytoplanktonRNA, Ribosomal, 16SRNA, Ribosomal, 18SSequence Analysis, DNARNA, Ribosomal, 16SRNA, Ribosomal, 18S

Identifiers

PMID34531387
PMCPMC8446083

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.