Evidence map›Paper›PMID 34527959›Full record

ArticleSTAR protocols2021

In-yeast reconstruction of the African swine fever virus genome isolated from clinical samples.

Fabien Labroussaa, Kemal Mehinagic, Valentina Cippa, Matthias Liniger, Hatice Akarsu, Nicolas Ruggli, Joerg Jores

Abstract read
In one paragraph

Article in STAR protocols, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Fabien LabroussaaInstitute of Veterinary Bacteriology, University of Bern, Bern 3001, Switzerland.
Kemal MehinagicDepartment of Infectious Diseases and Pathobiology (DIP), Vetsuisse Faculty, University of Bern, Bern 3001, Switzerland.
Valentina CippaInstitute of Veterinary Bacteriology, University of Bern, Bern 3001, Switzerland.
Matthias LinigerDepartment of Infectious Diseases and Pathobiology (DIP), Vetsuisse Faculty, University of Bern, Bern 3001, Switzerland.
Hatice AkarsuInstitute of Veterinary Bacteriology, University of Bern, Bern 3001, Switzerland.
Nicolas RuggliDepartment of Infectious Diseases and Pathobiology (DIP), Vetsuisse Faculty, University of Bern, Bern 3001, Switzerland.
Joerg JoresInstitute of Veterinary Bacteriology, University of Bern, Bern 3001, Switzerland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This protocol describes a synthetic genomics pipeline to clone and engineer the entire 190-kbp genome of the African swine fever virus (ASFV) genotype II in yeast using transformation-associated recombination cloning. The viral genome was cloned using DNA directly extracted from a clinical sample. In addition, the precise deletion of a non-essential gene and its replacement by a synthetic reporter gene cassette are presented. This protocol is applicable to other ASFV genotypes and other large DNA viruses.

Indexed as

African Swine FeverAfrican Swine Fever VirusAnimalsDNA, ViralGenetic EngineeringGenomicsSaccharomyces cerevisiaeSwineSynthetic BiologyDNA, ViralBiotechnology and bioengineeringGenomicsHealth SciencesMicrobiologyMolecular BiologySequencingSystems biology

Identifiers

PMID34527959
PMCPMC8433286

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.