Evidence map›Paper›PMID 34527438›Full record

ArticlePeerJ2021

Issues of under-representation in quantitative DNA metabarcoding weaken the inference about diet of the tundra vole

Magne Neby, Stefaniya Kamenova, Olivier Devineau, Rolf A Ims, Eeva M Soininen

Abstract read
In one paragraph

Article in PeerJ, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Low Genetic Variability of the Tundra Vole in Lithuania.Animals : an open access journal from MDPI · 2024
    Article
  6. Herbivorous dietary selection shown by hawfinch (Royal Society open science · 2023
    Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Magne NebyDepartment of Applied Ecology, Inland Norway University of Applied Sciences, Koppang, Norway.
Stefaniya KamenovaDepartment of Biosciences, University of Oslo, Oslo, Norway.
Olivier DevineauDepartment of Applied Ecology, Inland Norway University of Applied Sciences, Koppang, Norway.
Rolf A ImsDepartment of Arctic and Marine Biology, UiT-the Arctic University of Norway, Tromsø, Norway.
Eeva M SoininenDepartment of Arctic and Marine Biology, UiT-the Arctic University of Norway, Tromsø, Norway.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During the last decade, methods based on high-throughput sequencing such as DNA metabarcoding have opened up for a range of new questions in animal dietary studies. One of the major advantages of dietary metabarcoding resides in the potential to infer a quantitative relationship between sequence read proportions and biomass of ingested food. However, this relationship's robustness is highly dependent on the system under study, calling for case-specific assessments. Herbivorous small rodents often play important roles in the ecosystem, and the use of DNA metabarcoding for analyses of rodent diets is increasing. However, there has been no direct validation of the quantitative reliability of DNA metabarcoding for small rodents. Therefore, we used an experimental approach to assess the relationship between input plant biomass and sequence reads proportions from DNA metabarcoding in the tundra vole

Indexed as

Dietary metabarcodingDNA diet analysisFeeding trialFood proportionsHerbivoreHigh-throughput sequencingRodent

Identifiers

PMID34527438
PMCPMC8403475

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.