Evidence map›Paper›PMID 34526111›Full record

ArticleBMC research notes2021

Authentication of a novel antibody to zebrafish collagen type XI alpha 1 chain (Col11a1a).

Jonathon C Reeck, Makenna J Hardy, Xinzhu Pu, Cynthia Keller-Peck, Julia Thom Oxford

Open access · goldAbstract read
In one paragraph

Article in BMC research notes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.1field-weighted citation impact, top 55% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jonathon C Reeck *Department of Biological Sciences, Biomolecular Sciences Graduate Program, and Biomolecular Research Center, Boise State University, Boise, ID, 83725, USA.
Makenna J Hardy *Biomolecular Sciences Graduate Program, Biomolecular Research Center, Boise State University, Boise, ID, 83725, USA.
Xinzhu PuBiomolecular Research Center, Boise State University, Boise, ID, 83725, USA.
Cynthia Keller-PeckBiomolecular Research Center, Boise State University, Boise, ID, 83725, USA.
Julia Thom OxfordDepartment of Biological Sciences, Biomolecular Sciences Graduate Program, and Biomolecular Research Center, Boise State University, Boise, ID, 83725, USA. joxford@boisestate.edu.ORCID http://orcid.org/0000-0002-4850-3569
Boise State University · US

Funding

Women's health: interplay of maternal diet and key demographics on neurological health in the rural frontier and remote WestP20GM103408 · NIGMS · UNIVERSITY OF IDAHO · PI Kenneth A Cornell · 2012 to 2026
$59.8M
VPS35 D620N inhibits autophagy through disrupted hyaluronic acid-CD44 signalingP20GM109095 · NIGMS · BOISE STATE UNIVERSITY · PI OXFORD, JULIA THOM · 2014 to 2023
$22.7M
Type XI collagen isoforms in skeletal biologyR01AR047985 · NIAMS · BOISE STATE UNIVERSITY · PI OXFORD, JULIA T · 2001 to 2005
$1.3M
Type XI collagen isoforms in skeletal biologyK02AR048672 · NIAMS · BOISE STATE UNIVERSITY · PI OXFORD, JULIA T · 2002 to 2006
$376k
Regulation of cell signaling by Col11a1 during craniofacial development in the zeR15HD059949 · NICHD · BOISE STATE UNIVERSITY · PI OXFORD, JULIA THOM · 2009 to 2009
$212k
National Science Foundation 0619793National Science Foundation 0923535NIAMS NIH HHS R01 AR047985NICHD NIH HHS R15 HD059949NIGMS NIH HHS P20 GM103408NIGMS NIH HHS P20GM103408NIGMS NIH HHS P20 GM109095NIGMS NIH HHS P20GM109095NIH HHS K02AR048672NIH HHS R01AR047985NIH HHS R15HD059949
6 · The paper itself

Abstract

objectiveExtracellular matrix proteins play important roles in embryonic development and antibodies that specifically detect these proteins are essential to understanding their function. The zebrafish embryo is a popular model for vertebrate development but suffers from a dearth of authenticated antibody reagents for research. Here, we describe a novel antibody designed to detect the minor fibrillar collagen chain Col11a1a in zebrafish (AB strain).

resultsThe Col11a1a antibody was raised in rabbit against a peptide comprising a unique sequence within the zebrafish Col11a1a gene product. The antibody was affinity-purified and characterized by ELISA. The antibody is effective for immunoblot and immunohistochemistry applications. Protein bands identified by immunoblot were confirmed by mass spectrometry and sensitivity to collagenase. Col11a1a knockout zebrafish were used to confirm specificity of the antibody. The Col11a1a antibody labeled cartilaginous structures within the developing jaw, consistent with previously characterized Col11a1 antibodies in other species. Col11a1a within formalin-fixed paraffin-embedded zebrafish were recognized by the antibody. The antibodies and the approaches described here will help to address the lack of well-defined antibody reagents in zebrafish research.

Indexed as

Collagen Type XIZebrafishAnimalsAntibodiesExtracellular Matrix ProteinsPeptidesRabbitsAntibodiesCollagen Type XIExtracellular Matrix ProteinsPeptidesAntibody authenticationCartilageCol11a1aCollagen α1(XI)ImmunoblotImmunofluorescence microscopyZebrafish

Identifiers

PMID34526111
PMCPMC8444443
OpenAlexW3173257269

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.