Evidence map›Paper›PMID 34524823›Full record

ArticleJournal of proteome research2021

Reversible Click Chemistry Tag for Universal Proteome Sample Preparation for Top-Down and Bottom-Up Analysis.

Stephanie Biedka, Brigitte F Schmidt, Nolan M Frey, Sarah M Boothman, Jonathan S Minden, Amber Lee Wilson

Abstract read
In one paragraph

Article in Journal of proteome research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. IP-to-MS: An Unbiased Workflow for Antigen Profiling.Journal of proteome research · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Stephanie BiedkaImpact Proteomics, LLC., Pittsburgh, Pennsylvania 15206, United States.
Brigitte F SchmidtJGS Research Co., Pittsburgh, Pennsylvania 15212, United States.
Nolan M FreyCarnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States.
Sarah M BoothmanCarnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States.
Jonathan S MindenImpact Proteomics, LLC., Pittsburgh, Pennsylvania 15206, United States.
Amber Lee WilsonImpact Proteomics, LLC., Pittsburgh, Pennsylvania 15206, United States.ORCID 0000-0002-4434-7802

Funding

Translational Oncology Research Program (Project-005)P30CA124435 · NCI · STANFORD UNIVERSITY · PI Vittorio Sebastiano · 2007 to 2026
$71.4M
Interinstitutional Program in Cell and Molecular Biology: A Graduate Training Path to Promote Traditional and Non-Traditional Professional OutcomesT32GM133353 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BRODSKY, JEFFREY L., MURRAY, SANDRA ANN · 2020 to 2024
$1.5M
NCI NIH HHS P30 CA124435NIGMS NIH HHS T32 GM133353
6 · The paper itself

Abstract

Successful proteome analysis requires reliable sample preparation beginning with protein solubilization and ending with a sample free of contaminants, ready for downstream analysis. Most proteome sample preparation technologies utilize precipitation or filter-based separation, both of which have significant disadvantages. None of the current technologies are able to prepare both intact proteins or digested peptides. Here, we introduce a reversible protein tag, ProMTag, that enables whole proteome capture, cleanup, and release of intact proteins for top-down analysis. Alternatively, the addition of a novel Trypsin derivative to the workflow generates peptides for bottom-up analysis. We show that the ProMTag workflow yields >90% for intact proteins and >85% for proteome digests. For top-down analysis, ProMTag cleanup improves resolution on 2D gels; for bottom-up exploration, this methodology produced reproducible mass spectrometry results, demonstrating that the ProMTag method is a truly universal approach that produces high-quality proteome samples compatible with multiple downstream analytical techniques. Data are available via ProteomeXchange with identifier PXD027799.

Indexed as

Click ChemistryProteomicsMass SpectrometryPeptidesProteomePeptidesProteomeclick chemistryproteinprotein chemistryprotein mass spectrometryprotein modificationproteomicsreversible chemistrysample cleanupsample preparationtwo-dimensional gel electrophoresis

Identifiers

PMID34524823
PMCPMC9392872

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.