Evidence map›Paper›PMID 34523947›Full record

ArticleMicrobiology spectrum2021

Genetic Determinants of Intrinsic Antibiotic Tolerance in Mycobacterium avium.

William M Matern, Harley Parker, Carina Danchik, Leah Hoover, Joel S Bader, Petros C Karakousis

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Giant linear plasmids in Mycobacterium avium harbour a tRNA array unit.DNA research : an international journal for rapid publication of reports on genes and genomes · 2026
    Article
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

William M MaternHigh-Throughput Biology Center, Department of Biomedical Engineering, Johns Hopkins University School of Medicinegrid.471401.7, Baltimore, Maryland, USA.ORCID 0000-0001-9553-3771
Harley ParkerCenter for Systems Approaches to Infectious Diseases (C-SAID), Johns Hopkins University School of Medicinegrid.471401.7, Baltimore, Maryland, USA.ORCID 0000-0002-6314-6854
Carina DanchikCenter for Systems Approaches to Infectious Diseases (C-SAID), Johns Hopkins University School of Medicinegrid.471401.7, Baltimore, Maryland, USA.ORCID 0000-0003-2032-3467
Leah HooverCenter for Systems Approaches to Infectious Diseases (C-SAID), Johns Hopkins University School of Medicinegrid.471401.7, Baltimore, Maryland, USA.
Joel S BaderHigh-Throughput Biology Center, Department of Biomedical Engineering, Johns Hopkins University School of Medicinegrid.471401.7, Baltimore, Maryland, USA.ORCID 0000-0002-6020-4625
Petros C KarakousisCenter for Systems Approaches to Infectious Diseases (C-SAID), Johns Hopkins University School of Medicinegrid.471401.7, Baltimore, Maryland, USA.ORCID 0000-0003-1338-9206
Johns Hopkins University · US

Funding

BIOMEDICAL ENGINEERING TRAINING PROGRAMT32GM007057 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI KANOLD, PATRICK O, KARCHIN, RACHEL · 1985 to 2023
$10.4M
Mentoring in Immunometabolic Dysregulation in TB and TB/HIVK24AI143447 · NIAID · JOHNS HOPKINS UNIVERSITY · PI KARAKOUSIS, PETROS C · 2019 to 2024
$956k
Validation of RelA as a Target for Mycobacterium Tuberculosis PersistersR21AI114507 · NIAID · JOHNS HOPKINS UNIVERSITY · PI KARAKOUSIS, PETROS C · 2015 to 2016
$446k
NIAID NIH HHS K24 AI143447NIAID NIH HHS R21 AI114507NIGMS NIH HHS T32 GM007057
6 · The paper itself

Abstract

The Mycobacterium avium complex (MAC) is one of the most prevalent causes of nontuberculous mycobacteria pulmonary infection in the United States, and yet it remains understudied. Current MAC treatment requires more than a year of intermittent to daily combination antibiotic therapy, depending on disease severity. In order to shorten and simplify curative regimens, it is important to identify the innate bacterial factors contributing to reduced antibiotic susceptibility, namely, antibiotic tolerance genes. In this study, we performed a genome-wide transposon screen to elucidate M. avium genes that play a role in the bacterium's tolerance to first- and second-line antibiotics. We identified a total of 193 unique M. avium mutants with significantly altered susceptibility to at least one of the four clinically used antibiotics we tested, including two mutants (in DFS55_00905 and DFS55_12730) with panhypersusceptibility. The products of the antibiotic tolerance genes we have identified may represent novel targets for future drug development studies aimed at shortening the duration of therapy for MAC infections.

Indexed as

Anti-Bacterial AgentsClarithromycinDNA Transposable ElementsDrug Therapy, CombinationDrug ToleranceEthambutolHumansMoxifloxacinMycobacterium avium ComplexMycobacterium avium-intracellulare InfectionRifabutinAnti-Bacterial AgentsClarithromycinDNA Transposable ElementsEthambutolMoxifloxacinRifabutinbioinformaticsDNA sequencingmechanisms of actionmolecular geneticspersistencetolerance

Identifiers

PMID34523947
PMCPMC8557931
OpenAlexW3199460415

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.