Evidence map›Paper›PMID 34523147›Full record

ArticleThe EMBO journal2021

Dynamic reconfiguration of pro-apoptotic BAK on membranes.

Jarrod J Sandow, Iris Kl Tan, Alan S Huang, Shashank Masaldan, Jonathan P Bernardini, Ahmad Z Wardak, Richard W Birkinshaw, Robert L Ninnis, Ziyan Liu, Destiny Dalseno and 5 more

Abstract read
In one paragraph

Article in The EMBO journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Mechanisms of BCL-2 family proteins in mitochondrial apoptosis.Nature reviews. Molecular cell biology · 2023
    Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Apoptotic mitochondrial poration by a growing list of pore-forming BCL-2 family proteins.BioEssays : news and reviews in molecular, cellular and developmental biology · 2023
    Article
  14. Article
  15. Review
  16. Review
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

Jarrod J SandowThe Walter and Eliza Hall Institute of Medical Research, Parkville, Vic., Australia.ORCID 0000-0001-5684-8236
Iris Kl TanThe Walter and Eliza Hall Institute of Medical Research, Parkville, Vic., Australia.
Alan S HuangThe Walter and Eliza Hall Institute of Medical Research, Parkville, Vic., Australia.ORCID 0000-0002-2542-1616
Shashank MasaldanThe Walter and Eliza Hall Institute of Medical Research, Parkville, Vic., Australia.ORCID 0000-0003-4960-4983
Jonathan P BernardiniThe Walter and Eliza Hall Institute of Medical Research, Parkville, Vic., Australia.ORCID 0000-0002-5767-7624
Ahmad Z WardakThe Walter and Eliza Hall Institute of Medical Research, Parkville, Vic., Australia.
Richard W BirkinshawThe Walter and Eliza Hall Institute of Medical Research, Parkville, Vic., Australia.
Robert L NinnisThe Walter and Eliza Hall Institute of Medical Research, Parkville, Vic., Australia.
Ziyan LiuThe Walter and Eliza Hall Institute of Medical Research, Parkville, Vic., Australia.
Destiny DalsenoThe Walter and Eliza Hall Institute of Medical Research, Parkville, Vic., Australia.
Daisy LioThe Walter and Eliza Hall Institute of Medical Research, Parkville, Vic., Australia.
Giuseppi InfusiniThe Walter and Eliza Hall Institute of Medical Research, Parkville, Vic., Australia.
Peter E CzabotarThe Walter and Eliza Hall Institute of Medical Research, Parkville, Vic., Australia.
Andrew I WebbThe Walter and Eliza Hall Institute of Medical Research, Parkville, Vic., Australia.ORCID 0000-0001-5061-6995
Grant DewsonThe Walter and Eliza Hall Institute of Medical Research, Parkville, Vic., Australia.ORCID 0000-0003-4251-8898

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BAK and BAX, the effectors of intrinsic apoptosis, each undergo major reconfiguration to an activated conformer that self-associates to damage mitochondria and cause cell death. However, the dynamic structural mechanisms of this reconfiguration in the presence of a membrane have yet to be fully elucidated. To explore the metamorphosis of membrane-bound BAK, we employed hydrogen-deuterium exchange mass spectrometry (HDX-MS). The HDX-MS profile of BAK on liposomes comprising mitochondrial lipids was consistent with known solution structures of inactive BAK. Following activation, HDX-MS resolved major reconfigurations in BAK. Mutagenesis guided by our HDX-MS profiling revealed that the BCL-2 homology (BH) 4 domain maintains the inactive conformation of BAK, and disrupting this domain is sufficient for constitutive BAK activation. Moreover, the entire N-terminal region preceding the BAK oligomerisation domains became disordered post-activation and remained disordered in the activated oligomer. Removal of the disordered N-terminus did not impair, but rather slightly potentiated, BAK-mediated membrane permeabilisation of liposomes and mitochondria. Together, our HDX-MS analyses reveal new insights into the dynamic nature of BAK activation on a membrane, which may provide new opportunities for therapeutic targeting.

Indexed as

Animalsbcl-2 Homologous Antagonist-Killer ProteinBinding SitesCloning, MolecularDeuterium Exchange MeasurementEscherichia coliGene ExpressionGenetic VectorsHumansKineticsLiposomesMembrane LipidsMiceModels, MolecularNuclear Magnetic Resonance, BiomolecularProtein BindingBAK1 protein, humanbcl-2 Homologous Antagonist-Killer ProteinBCL2 protein, humanLiposomesMembrane LipidsProto-Oncogene Proteins c-bcl-2Recombinant ProteinsapoptosisBAKBCL-2hydrogen-deuterium exchange mass spectrometrymembrane

Identifiers

PMID34523147
PMCPMC8521275

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.