ArticleComputational and structural biotechnology journal2021
MULocDeep: A deep-learning framework for protein subcellular and suborganellar localization prediction with residue-level interpretation.
Article in Computational and structural biotechnology journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.
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Who cites it
64 citing papers in PubMed.
- iMPI: An Integrative Database for MicroProteins Encoded by Intron Retention in Tumors.Proteomics · 2026Article
- Genome-wide identification and expression analysis of chickpea U-box E3 ligases identifies CaPUB4 and CaPUB16 as candidate responsive genes for abiotic stress tolerance.Journal of applied genetics · 2026Article
- Discovery and design of potent cell surface display elements.Nature biotechnology · 2026Article
- Subcellular localization as a driver of protein function.Nature reviews. Molecular cell biology · 2026Review
- Technologies to measure and modulate protein subcellular localization.Nature reviews. Molecular cell biology · 2026Review
- Out-of-distribution generalization enhances protein function annotation for low-homology sequences.Briefings in bioinformatics · 2026Article
- Glycerol 3-phosphate acyltransferase exacerbates α-synuclein-induced toxicity by increasing lipid peroxidation.Nature communications · 2026Article
- The oleaginous yeast Cutaneotrichosporon oleaginosum modifies corn stover alkali lignin.Scientific reports · 2026Article
- Leveraging AI for cell biology discovery.Biochemical Society transactions · 2026Review
- Deep Learning-Based Prediction of Individual CellBiosensors · 2025Article
- Constraint-based metabolic modeling reveals metabolic properties underpinning the unprecedented growth of Chlorella ohadii.The New phytologist · 2025Article
- Salicylic acid biosynthesis via the PAL pathway requires benzaldehyde synthase and a benzyl salicylate-specific esterase.The Plant cell · 2025Article
- Structural dynamics of mitochondrial ATP synthase inbioRxiv : the preprint server for biology · 2025Article
- RSLpred2: An Integrated Web Server for the Annotation of Rice Proteome Subcellular Localization Using Deep Learning.Rice (New York, N.Y.) · 2025Article
- MULoc-target: Targeting peptide classification and detection using a protein language model.Briefings in bioinformatics · 2025Article
- NAD(H) and NADP(H) in plants and mammals.Molecular plant · 2025Review
- Multiple Pathways to Red Carotenoid Coloration: House Finches (Haemorhous mexicanus) Do Not Use CYP2J19 to Produce Red Plumage.Molecular ecology · 2025Article
- Deep learning prioritizes cancer mutations that alter protein nucleocytoplasmic shuttling to drive tumorigenesis.Nature communications · 2025Article
- Protein codes promote selective subcellular compartmentalization.Science (New York, N.Y.) · 2025Article
- AtSubP-2.0: An integrated web server for the annotation of Arabidopsis proteome subcellular localization using deep learning.The plant genome · 2025Article
4 more citing papers are in PubMed but not listed here.
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7 authors.
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Abstract
Prediction of protein localization plays an important role in understanding protein function and mechanisms. In this paper, we propose a general deep learning-based localization prediction framework, MULocDeep, which can predict multiple localizations of a protein at both subcellular and suborganellar levels. We collected a dataset with 44 suborganellar localization annotations in 10 major subcellular compartments-the most comprehensive suborganelle localization dataset to date. We also experimentally generated an independent dataset of mitochondrial proteins in
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