Evidence map›Paper›PMID 34520554›Full record

ArticleNucleic acids research2021

Novel anti-repression mechanism of H-NS proteins by a phage protein.

Fredj Ben Bdira, Amanda M Erkelens, Liang Qin, Alexander N Volkov, Andrew M Lippa, Nicholas Bowring, Aimee L Boyle, Marcellus Ubbink, Simon L Dove, Remus T Dame

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Quantitative Determination of DNA Bridging Efficiency of Chromatin Proteins.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  8. Article
  9. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Fredj Ben BdiraDepartment of Macromolecular Biochemistry, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC Leiden, The Netherlands.ORCID 0000-0003-0205-4144
Amanda M ErkelensDepartment of Macromolecular Biochemistry, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC Leiden, The Netherlands.ORCID 0000-0001-9369-5814
Liang QinDepartment of Macromolecular Biochemistry, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC Leiden, The Netherlands.
Alexander N VolkovVIB-VUB Structural Biology Research Center, Pleinlaan 2, 1050 Brussels, Belgium.ORCID 0000-0002-0103-059X
Andrew M LippaBoston Children's Hospital, Division of Infectious Diseases, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-0978-1611
Nicholas BowringDepartment of Macromolecular Biochemistry, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC Leiden, The Netherlands.
Aimee L BoyleDepartment of Macromolecular Biochemistry, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC Leiden, The Netherlands.ORCID 0000-0003-4176-6080
Marcellus UbbinkDepartment of Macromolecular Biochemistry, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC Leiden, The Netherlands.ORCID 0000-0002-2615-6914
Simon L DoveBoston Children's Hospital, Division of Infectious Diseases, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-3758-608X
Remus T DameDepartment of Macromolecular Biochemistry, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC Leiden, The Netherlands.ORCID 0000-0001-9863-1692
Leiden University · NLBoston Children's Hospital · USVIB-VUB Center for Structural Biology · BE

Funding

Control of fimbrial gene expression in Pseudomonas aeruginosaR01AI105013 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI DOVE, SIMON L · 2014 to 2018
$2.2M
NIAID NIH HHS R01 AI105013
6 · The paper itself

Abstract

H-NS family proteins, bacterial xenogeneic silencers, play central roles in genome organization and in the regulation of foreign genes. It is thought that gene repression is directly dependent on the DNA binding modes of H-NS family proteins. These proteins form lateral protofilaments along DNA. Under specific environmental conditions they switch to bridging two DNA duplexes. This switching is a direct effect of environmental conditions on electrostatic interactions between the oppositely charged DNA binding and N-terminal domains of H-NS proteins. The Pseudomonas lytic phage LUZ24 encodes the protein gp4, which modulates the DNA binding and function of the H-NS family protein MvaT of Pseudomonas aeruginosa. However, the mechanism by which gp4 affects MvaT activity remains elusive. In this study, we show that gp4 specifically interferes with the formation and stability of the bridged MvaT-DNA complex. Structural investigations suggest that gp4 acts as an 'electrostatic zipper' between the oppositely charged domains of MvaT protomers, and stabilizes a structure resembling their 'half-open' conformation, resulting in relief of gene silencing and adverse effects on P. aeruginosa growth. The ability to control H-NS conformation and thereby its impact on global gene regulation and growth might open new avenues to fight Pseudomonas multidrug resistance.

Indexed as

Bacterial ProteinsDNADNA-Binding ProteinsGene Expression Regulation, BacterialGene SilencingModels, MolecularProtein BindingPseudomonasPseudomonas PhagesTrans-ActivatorsViral ProteinsBacterial ProteinsDNADNA-Binding ProteinsH-NS protein, bacteriaMvaT protein, PseudomonasTrans-ActivatorsViral Proteins

Identifiers

PMID34520554
PMCPMC8501957
OpenAlexW3199883234

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.