Evidence map›Paper›PMID 34520487›Full record

ArticlePLoS pathogens2021

Quantifying transmission dynamics of acute hepatitis C virus infections in a heterogeneous population using sequence data.

Gonché Danesh, Victor Virlogeux, Christophe Ramière, Caroline Charre, Laurent Cotte, Samuel Alizon

Abstract read
In one paragraph

Article in PLoS pathogens, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Gonché DaneshMIVEGEC, CNRS, IRD, Université de Montpellier - Montpellier, France.ORCID 0000-0001-8688-7666
Victor VirlogeuxClinical Research Center, Croix-Rousse Hospital, Hospices Civils de Lyon - Lyon, France.
Christophe RamièreVirology Laboratory, Croix-Rousse Hospital, Hospices Civils de Lyon - Lyon, France.ORCID 0000-0002-1981-7155
Caroline CharreVirology Laboratory, Croix-Rousse Hospital, Hospices Civils de Lyon - Lyon, France.ORCID 0000-0002-4356-5146
Laurent CotteInfectious Diseases Department, Croix-Rousse Hospital, Hospices Civils de Lyon - Lyon, France.ORCID 0000-0002-4063-9250
Samuel AlizonMIVEGEC, CNRS, IRD, Université de Montpellier - Montpellier, France.ORCID 0000-0002-0779-9543

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Opioid substitution and syringes exchange programs have drastically reduced hepatitis C virus (HCV) spread in France but HCV sexual transmission in men having sex with men (MSM) has recently arisen as a significant public health concern. The fact that the virus is transmitting in a heterogeneous population, with different transmission routes, makes prevalence and incidence rates poorly informative. However, additional insights can be gained by analyzing virus phylogenies inferred from dated genetic sequence data. By combining a phylodynamics approach based on Approximate Bayesian Computation (ABC) and an original transmission model, we estimate key epidemiological parameters of an ongoing HCV epidemic among MSMs in Lyon (France). We show that this new epidemic is largely independent of the previously observed non-MSM HCV epidemics and that its doubling time is ten times lower (0.44 years versus 4.37 years). These results have practical implications for HCV control and illustrate the additional information provided by virus genomics in public health.

Indexed as

EpidemicsFemaleFranceHepacivirusHepatitis CHomosexuality, MaleHumansMalePhylogenySexual Behavior

Identifiers

PMID34520487
PMCPMC8462723

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.