Evidence map›Paper›PMID 34519784›Full record

ArticleG3 (Bethesda, Md.)2021

The zinc-finger protein OEF-1 stabilizes histone modification patterns and promotes efficient splicing in the Caenorhabditis elegans germline.

Catherine E McManus, Mariateresa Mazzetto, Guifeng Wei, Mei Han, Valerie Reinke

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Catherine E McManusDepartment of Genetics, Yale University School of Medicine, New Haven, CT 06520, USA.
Mariateresa MazzettoDepartment of Genetics, Yale University School of Medicine, New Haven, CT 06520, USA.
Guifeng WeiDevelopmental Epigenetics, Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK.ORCID 0000-0002-5698-426X
Mei HanDepartment of Genetics, Yale University School of Medicine, New Haven, CT 06520, USA.
Valerie ReinkeDepartment of Genetics, Yale University School of Medicine, New Haven, CT 06520, USA.

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007499 · NIGMS · YALE UNIVERSITY · PI CARLSON, JOHN R, REINKE, VALERIE J · 1985 to 2022
$13.9M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Epigenetic mechanisms governing genome partitioning and gene expression in germ cellsR35GM131776 · NIGMS · YALE UNIVERSITY · PI REINKE, VALERIE J · 2019 to 2023
$2.1M
Deciphering mechanisms governing functional partitioning of the C. elegans genomeR01GM108663 · NIGMS · YALE UNIVERSITY · PI REINKE, VALERIE J · 2014 to 2017
$1.3M
NIGMS NIH HHS R01 GM108663NIGMS NIH HHS R35 GM131776NIGMS NIH HHS T32 GM007499NIH HHS P40 OD010440
6 · The paper itself

Abstract

To ensure stable transmission of genetic information to the next generation, germ cells frequently silence sex chromosomes, as well as autosomal loci that promote inappropriate differentiation programs. In Caenorhabditis elegans, silenced and active genomic domains are established in germ cells by the histone modification complexes MES-2/3/6 and MES-4, which promote silent and active chromatin states, respectively. These states are generally mutually exclusive and modulation of one state influences the pattern of the other. Here, we identify the zinc-finger protein OEF-1 as a novel modifier of this epigenetic balance in the C. elegans germline. Loss of oef-1 genetically enhances mes mutant phenotypes. Moreover, OEF-1 binding correlates with the active modification H3K36me3 and sustains H3K36me3 levels in the absence of MES-4 activity. OEF-1 also promotes efficient mRNA splicing activity, a process that is influenced by H3K36me3 levels. Finally, OEF-1 limits deposition of the silencing modification H3K27me3 on the X chromosome and at repressed autosomal loci. We propose that OEF-1 might act as an intermediary to mediate the downstream effects of H3K36me3 that promote transcript integrity, and indirectly affect gene silencing as a consequence.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsAnimalsGerm CellsHistone CodeHistonesX ChromosomeZincCaenorhabditis elegans ProteinsHistonesmes-2 protein, C elegansMes-4 protein, C elegansZincC. eleganschromatingerm cellssplicingX chromosome

Identifiers

PMID34519784
PMCPMC8664474

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.