Evidence map›Paper›PMID 34518560›Full record

ArticleScientific reports2021

Mechanistic insights into the Japanese encephalitis virus RNA dependent RNA polymerase protein inhibition by bioflavonoids from Azadirachta indica.

Vivek Dhar Dwivedi, Ankita Singh, Sherif Aly El-Kafraway, Thamir A Alandijany, Arwa A Faizo, Leena Hussein Bajrai, Mohammad Amjad Kamal, Esam Ibraheem Azhar

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 36 citations in OpenAlex.

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  16. Discovery of Small Molecules fromLife (Basel, Switzerland) · 2022
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  17. Discovery of Bispecific Lead Compounds fromMolecules (Basel, Switzerland) · 2022
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  18. Review
  19. The Antimicrobial Potential of the Neem TreeFrontiers in pharmacology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 4 countries.

Vivek Dhar DwivediCentre for Bioinformatics, Computational and Systems Biology, Pathfinder Research and Training Foundation, Greater Noida, 201308, India.
Ankita SinghSchool of Environmental Sciences, Jawaharlal Nehru University, New Delhi, 110067, India.
Sherif Aly El-KafrawaySpecial Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia.
Thamir A AlandijanySpecial Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia.
Arwa A FaizoSpecial Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia.
Leena Hussein BajraiSpecial Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia.
Mohammad Amjad KamalSpecial Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia.
Esam Ibraheem AzharSpecial Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia. eazhar@kau.edu.sa.
King Abdulaziz University · SAJawaharlal Nehru University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Japanese encephalitis (JE) virus is a flavivirus causing encephalitis causing neurological damage. RNA-dependent-RNA-polymerase (RdRp) is responsible for genome replication making it excellent anti-viral target. In this study, the crystal structure of JE RdRp (jRdRp) and bioflavonoids reported in Azadirachta indica were retrieved from specific databases. Structure-based virtual screening was employed using MTiOpenScreen server and top four compounds selected with the most negative docking scores. Conformations were redocked using AutoDock Vina; these complexes showed mechanistic interactions with Arg

Indexed as

Antiviral AgentsAzadirachtaBinding SitesDrug DiscoveryEncephalitis, JapaneseEncephalitis Virus, JapaneseFlavonoidsMolecular Docking SimulationMolecular Dynamics SimulationMolecular StructurePlant ExtractsProtein BindingRNA-Dependent RNA PolymeraseStructure-Activity RelationshipAntiviral AgentsFlavonoidsPlant ExtractsRNA-Dependent RNA Polymerase

Identifiers

PMID34518560
PMCPMC8437980
OpenAlexW3200153144

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.