Evidence map›Paper›PMID 34518542›Full record

ArticleNPJ Regenerative medicine2021

The Warburg effect is necessary to promote glycosylation in the blastema during zebrafish tail regeneration.

Jason W Sinclair, David R Hoying, Erica Bresciani, Damian Dalle Nogare, Carli D Needle, Alexandra Berger, Weiwei Wu, Kevin Bishop, Abdel G Elkahloun, Ajay Chitnis and 2 more

Open access · goldAbstract read
In one paragraph

Article in NPJ Regenerative medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Signal control during tissue regeneration in adult animals.Nature reviews. Molecular cell biology · 2026
    Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Mammalian Blastema: Possibility and Potentials.International journal of stem cells · 2025
    Review
  12. Frontiers in cell and developmental biology · 2025
    Article
  13. Epithelial-mesenchymal transition in tissue repair and degeneration.Nature reviews. Molecular cell biology · 2024
    Review
  14. Imaging immunometabolismImmunometabolism (Cobham, Surrey) · 2024
    Article
  15. Identification of distinct vascular mural cell populations during zebrafish embryonic development.Developmental dynamics : an official publication of the American Association of Anatomists · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Jason W SinclairTranslational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD, USA.ORCID http://orcid.org/0000-0003-1147-0596
David R HoyingTranslational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD, USA.
Erica BrescianiTranslational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD, USA.
Damian Dalle NogareAquatic Models of Human Development Affinity Group, National Institute of Child Health and Human Development, Bethesda, MD, USA.
Carli D NeedleTranslational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD, USA.
Alexandra BergerTranslational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD, USA.
Weiwei WuCancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, Bethesda, MD, USA.
Kevin BishopTranslational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD, USA.
Abdel G ElkahlounCancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, Bethesda, MD, USA.
Ajay ChitnisAquatic Models of Human Development Affinity Group, National Institute of Child Health and Human Development, Bethesda, MD, USA.
Paul LiuTranslational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD, USA.
Shawn M BurgessTranslational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD, USA. burgess@mail.nih.gov.
National Human Genome Research Institute · US

Funding

Hearing regeneration in zebrafishZIAHG200386 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BURGESS, SHAWN M · 2012 to 2025
$12.5M
Intramural NIH HHS ZIA HG200386U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (NHGRI) ZIAHG200386-06
6 · The paper itself

Abstract

Throughout their lifetime, fish maintain a high capacity for regenerating complex tissues after injury. We utilized a larval tail regeneration assay in the zebrafish Danio rerio, which serves as an ideal model of appendage regeneration due to its easy manipulation, relatively simple mixture of cell types, and superior imaging properties. Regeneration of the embryonic zebrafish tail requires development of a blastema, a mass of dedifferentiated cells capable of replacing lost tissue, a crucial step in all known examples of appendage regeneration. Using this model, we show that tail amputation triggers an obligate metabolic shift to promote glucose metabolism during early regeneration similar to the Warburg effect observed in tumor forming cells. Inhibition of glucose metabolism did not affect the overall health of the embryo but completely blocked the tail from regenerating after amputation due to the failure to form a functional blastema. We performed a time series of single-cell RNA sequencing on regenerating tails with and without inhibition of glucose metabolism. We demonstrated that metabolic reprogramming is required for sustained TGF-β signaling and blocking glucose metabolism largely mimicked inhibition of TGF-β receptors, both resulting in an aberrant blastema. Finally, we showed using genetic ablation of three possible metabolic pathways for glucose, that metabolic reprogramming is required to provide glucose specifically to the hexosamine biosynthetic pathway while neither glycolysis nor the pentose phosphate pathway were necessary for regeneration.

Identifiers

PMID34518542
PMCPMC8437957
OpenAlexW3201543555

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.