Evidence map›Paper›PMID 34516843›Full record

ArticleScience (New York, N.Y.)2021

Developmental chromatin programs determine oncogenic competence in melanoma.

Arianna Baggiolini, Scott J Callahan, Emily Montal, Joshua M Weiss, Tuan Trieu, Mohita M Tagore, Sam E Tischfield, Ryan M Walsh, Shruthy Suresh, Yujie Fan and 14 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 107 papers.

0numbers the graph read from it
0cells of the map it votes in
107citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

107 citing papers in PubMed.

  1. Review
  2. Changes in the transcriptome and synthetic lethal dependencies followingProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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47 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

24 authors.

Arianna Baggiolini *Center for Stem Cell Biology and Developmental Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.ORCID 0000-0002-2476-561X
Scott J Callahan *Center for Stem Cell Biology and Developmental Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Emily MontalDepartment of Cancer Biology and Genetics, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.ORCID 0000-0001-7855-3631
Joshua M WeissDepartment of Cancer Biology and Genetics, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.ORCID 0000-0001-7340-4004
Tuan TrieuInstitute for Computational Biomedicine, Weill Cornell Medical College, New York, NY 10021, USA.
Mohita M TagoreDepartment of Cancer Biology and Genetics, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.ORCID 0000-0002-2586-1427
Sam E TischfieldDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.ORCID 0000-0002-5717-3856
Ryan M WalshCenter for Stem Cell Biology and Developmental Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Shruthy SureshDepartment of Cancer Biology and Genetics, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.ORCID 0000-0002-2985-8284
Yujie FanCenter for Stem Cell Biology and Developmental Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.ORCID 0000-0001-8642-0695
Nathaniel R CampbellDepartment of Cancer Biology and Genetics, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.ORCID 0000-0002-0355-0708
Sarah C PerleeDepartment of Cancer Biology and Genetics, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.ORCID 0000-0003-3295-6755
Nathalie SauratCenter for Stem Cell Biology and Developmental Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.ORCID 0000-0002-6439-5166
Miranda V HunterDepartment of Cancer Biology and Genetics, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.ORCID 0000-0002-6971-1738
Theresa Simon-VermotDepartment of Cancer Biology and Genetics, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.ORCID 0000-0002-2814-2903
Ting-Hsiang HuangDepartment of Cancer Biology and Genetics, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.ORCID 0000-0001-8739-0571
Yilun MaDepartment of Cancer Biology and Genetics, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.ORCID 0000-0002-2297-9980
Travis HollmannDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.ORCID 0000-0003-1599-0433
Satish K TickooDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.ORCID 0000-0002-9775-0478
Barry S TaylorDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.ORCID 0000-0002-3355-9471
Ekta KhuranaInstitute for Computational Biomedicine, Weill Cornell Medical College, New York, NY 10021, USA.ORCID 0000-0002-4351-7566
Richard P KocheCenter for Epigenetics Research, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.ORCID 0000-0002-6820-5083
Lorenz Studer *Center for Stem Cell Biology and Developmental Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.ORCID 0000-0003-0741-7987
Richard M White *Department of Cancer Biology and Genetics, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.ORCID 0000-0001-9099-9169

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Weill Cornell/Rockefeller/Sloan-Kettering MST ProgramT32GM007739 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI HSU, KATHARINE C · 1985 to 2023
$51.1M
TRAINING PROGRAM IN MOLECULAR AND CELLULAR BIOLOGYT32GM008539 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI BROWN, ANTHONY M.C. · 1995 to 2020
$5.0M
Dissecting the complexity of metastasis with mathematical models and quantitative experiments with in zebrafishR01CA229215 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI WHITE, RICHARD MARK, XAVIER, JOAO · 2018 to 2022
$3.1M
Evolutionary dynamics of melanoma metastasisDP2CA186572 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI WHITE, RICHARD MARK · 2013 to 2013
$2.7M
Lipid programs in melanocyte transformationR01CA238317 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI OVERHOLTZER, MICHAEL H., WHITE, RICHARD MARK · 2020 to 2025
$2.0M
The role of melanocyte precursors in zebrafish pigmentation disordersK08AR055368 · NIAMS · SLOAN-KETTERING INST CAN RESEARCH · PI WHITE, RICHARD MARK · 2009 to 2013
$635k
Investigating cancer metabolism and its potential for therapeutic interventionK00CA223016 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI MONTAL, EMILY DINA · 2019 to 2022
$391k
Probing schizophrenia associated neurodevelopmental defects in integrated neocortical organoidsF32MH116590 · NIMH · SLOAN-KETTERING INST CAN RESEARCH · PI WALSH, RYAN · 2019 to 2021
$208k
Dissecting the Ecology of Metastasis in a Zebrafish Model: Trade-Offs of Size and Diversity in Circulating Tumor Cell ClustersF30CA220954 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI CAMPBELL, NATHANIEL R · 2018 to 2021
$194k
Investigating the Role of Adipocyte Lipolysis in Melanoma ProgressionF30CA236442 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI WEISS, JOSHUA M. · 2019 to 2022
$186k
Malignant melanoma studies using iPS derived melanocytes and ZebrafishF31CA196305 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI CALLAHAN, SCOTT JAMES · 2015 to 2018
$155k
NCI NIH HHS DP2 CA186572NCI NIH HHS F30 CA220954NCI NIH HHS F30 CA236442NCI NIH HHS F31 CA196305NCI NIH HHS K00 CA223016NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA229215NCI NIH HHS R01 CA238317NIAMS NIH HHS K08 AR055368NIGMS NIH HHS T32 GM007739NIGMS NIH HHS T32 GM008539NIMH NIH HHS F32 MH116590
6 · The paper itself

Abstract

Oncogenes only transform cells under certain cellular contexts, a phenomenon called oncogenic competence. Using a combination of a human pluripotent stem cell–derived cancer model along with zebrafish transgenesis, we demonstrate that the transforming ability of BRAF

Indexed as

AnimalsAnimals, Genetically ModifiedATPases Associated with Diverse Cellular ActivitiesCarcinogenesisChromatinDNA-Binding ProteinsHumansMelanocytesMelanomaMiceNeoplasms, ExperimentalNeoplastic Stem CellsNeural CrestPluripotent Stem CellsProto-Oncogene Proteins B-rafSOXE Transcription FactorsATAD2 protein, humanATPases Associated with Diverse Cellular ActivitiesBRAF protein, humanChromatinDNA-Binding ProteinsProto-Oncogene Proteins B-rafSOX10 protein, humanSOXE Transcription Factors

Identifiers

PMID34516843
PMCPMC9440978

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.