Evidence map›Paper›PMID 34515683›Full record

ArticleJournal of visualized experiments : JoVE2021

Automated Imaging and Analysis for the Quantification of Fluorescently Labeled Macropinosomes.

Koen M O Galenkamp, Cheska Marie Galapate, Yijuan Zhang, Cosimo Commisso

Open access · greenAbstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Koen M O GalenkampSanford Burnham Prebys Medical Discovery Institute, NCI-designated Cancer Center; kgalenkamp@sbpdiscovery.org.
Cheska Marie GalapateSanford Burnham Prebys Medical Discovery Institute, NCI-designated Cancer Center.
Yijuan ZhangSanford Burnham Prebys Medical Discovery Institute, NCI-designated Cancer Center.
Cosimo CommissoSanford Burnham Prebys Medical Discovery Institute, NCI-designated Cancer Center; ccommisso@sbpdiscovery.org.
Discovery Institute · USSanford Burnham Prebys Medical Discovery Institute · US

Funding

Tumor Microenvironment and Cancer ImmunologyP30CA030199 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI ELENA B PASQUALE · 1985 to 2026
$107.2M
Regulation of Nutrient Stress-Induced Macropinocytosis in Pancreatic Ductal AdenocarcinomaR01CA207189 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI COMMISSO, COSIMO · 2016 to 2025
$4.7M
Regulation and Function of Stromal Macropinocytosis in Pancreatic Ductal AdenocarcinomaR01CA254806 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI COMMISSO, COSIMO · 2021 to 2025
$2.9M
Cancer Targets and Drug DiscoveryT32CA211036 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI COSFORD, NICHOLAS DAVID · 2018 to 2022
$1.2M
The Macropinosome: Uncovering the Molecular Anatomy of an Oncogene-driven OrganelleR21CA243701 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI COMMISSO, COSIMO · 2020 to 2021
$501k
NCI NIH HHS P30 CA030199NCI NIH HHS R01 CA207189NCI NIH HHS R01 CA254806NCI NIH HHS R21 CA243701NCI NIH HHS T32 CA211036
6 · The paper itself

Abstract

Macropinocytosis is a non-specific fluid-phase uptake pathway that allows cells to internalize large extracellular cargo, such as proteins, pathogens, and cell debris, through bulk endocytosis. This pathway plays an essential role in a variety of cellular processes, including the regulation of immune responses and cancer cell metabolism. Given this importance in biological function, examining cell culture conditions can provide valuable information by identifying regulators of this pathway and optimizing conditions to be employed in the discovery of novel therapeutic approaches. The study describes an automated imaging and analysis technique using standard laboratory equipment and a cell imaging multi-mode plate reader for the rapid quantification of the macropinocytic index in adherent cells. The automated method is based on the uptake of high molecular weight fluorescent dextran and can be applied to 96-well microplates to facilitate assessments of multiple conditions in one experiment or fixed samples mounted onto glass coverslips. This approach is aimed at maximizing reproducibility and reducing experimental variation while being both time-saving and cost-effective.

Indexed as

EndosomesPinocytosisEndocytosisMicroscopy, FluorescenceReproducibility of Results

Identifiers

PMID34515683
PMCPMC8919987
OpenAlexW3195385532

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.