Evidence map›Paper›PMID 34515477›Full record

ArticleJournal of medicinal chemistry2021

New Design Rules for Developing Potent Cell-Active Inhibitors of the Nucleosome Remodeling Factor (NURF) via BPTF Bromodomain Inhibition.

Huda Zahid, Caroline R Buchholz, Manjulata Singh, Michael F Ciccone, Alice Chan, Stanley Nithianantham, Ke Shi, Hideki Aihara, Marcus Fischer, Ernst Schönbrunn and 3 more

Open access · greenAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. BPTF-665aa mediate chromatin remodeling drives chemoresistance in T-LBL/ALL.Journal of experimental & clinical cancer research : CR · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. A BPTF-specific PROTAC degrader enhances NK cell-based cancer immunotherapy.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Article
  12. Chromatin remodellers as therapeutic targets.Nature reviews. Drug discovery · 2024
    Review
  13. Article
  14. Review
  15. Article
  16. Bromodomain inhibitors and therapeutic applications.Current opinion in chemical biology · 2023
    Review
  17. Article
  18. Article
  19. Review
  20. Virtual Special Issue: Epigenetics 2022.ACS pharmacology & translational science · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Huda ZahidDepartment of Chemistry, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455, United States.ORCID 0000-0003-1711-7048
Caroline R BuchholzDepartment of Medicinal Chemistry, University of Minnesota, 308 Harvard Street SE, Minneapolis, Minnesota 55455, United States.
Manjulata SinghThe Department of Human and Molecular Genetics, VCU Institute of Molecular Medicine, Massey Cancer Center, Virginia Commonwealth University, Richmond, Virginia 23298, United States.
Michael F CicconeCold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, New York 11724, United States.
Alice ChanDrug Discovery Department, H. Lee Moffitt Cancer Center and Research Institute, 12902 Magnolia Drive, Tampa, Florida 33612, United States.
Stanley NithiananthamDepartment of Chemical Biology & Therapeutics and Department of Structural Biology, St. Jude Children's Research Hospital, Memphis, Tennessee 38105, United States.
Ke ShiDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, 321 Church Street SE, Minneapolis, Minnesota 55455, United States.ORCID 0000-0003-4175-3714
Hideki AiharaDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, 321 Church Street SE, Minneapolis, Minnesota 55455, United States.ORCID 0000-0001-7508-6230
Marcus FischerDepartment of Chemical Biology & Therapeutics and Department of Structural Biology, St. Jude Children's Research Hospital, Memphis, Tennessee 38105, United States.
Ernst SchönbrunnDrug Discovery Department, H. Lee Moffitt Cancer Center and Research Institute, 12902 Magnolia Drive, Tampa, Florida 33612, United States.ORCID 0000-0002-3589-3510
Camila O Dos SantosCold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, New York 11724, United States.
Joseph W LandryThe Department of Human and Molecular Genetics, VCU Institute of Molecular Medicine, Massey Cancer Center, Virginia Commonwealth University, Richmond, Virginia 23298, United States.
William C K PomerantzDepartment of Chemistry, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455, United States.ORCID 0000-0002-0163-4078
University of Minnesota · USCold Spring Harbor Laboratory · USMoffitt Cancer Center · USSt. Jude Children's Research Hospital · USVirginia Commonwealth University · US

Funding

Single-Cell Biology Shared ResourceP30CA045508 · NCI · COLD SPRING HARBOR LABORATORY · PI David A Tuveson · 1987 to 2026
$118.9M
TRANSLATIONAL RESEARCHP30CA076292 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI John L. Cleveland · 1998 to 2026
$93.5M
User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI STEVEN E EALICK · 2018 to 2026
$34.2M
Structural studies of viral replication and invasionR35GM118047 · NIGMS · UNIVERSITY OF MINNESOTA · PI Hideki Aihara · 2016 to 2026
$6.3M
Training the Next Generation of Chemical BiologistsT32GM132029 · NIGMS · UNIVERSITY OF MINNESOTA · PI Erin Elizabeth Carlson, William Charles Krause Pomerantz · 2019 to 2026
$2.7M
Chemical Probe Development for Epigenetic Complexes Enabled by Protein-Observed 19F NMRR35GM140837 · NIGMS · UNIVERSITY OF MINNESOTA · PI William Charles Krause Pomerantz · 2021 to 2026
$2.5M
Exploiting Water Network Perturbations in Protein Binding SitesR35GM142772 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI FISCHER, MARCUS · 2021 to 2025
$2.2M
Probing the role of epigenomics in Brca1-deficient mammary tumors.R01CA248158 · NCI · COLD SPRING HARBOR LABORATORY · PI DOS SANTOS, CAMILA · 2020 to 2024
$2.2M
Pixel Array Detector for X-ray CrystallographyS10RR029205 · NCRR · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2010 to 2010
$1.8M
Defining the cellular and molecular effects of aging and age of pregnancy on breast tissue homeostasis and cancer initiationR01AG069727 · NIA · COLD SPRING HARBOR LABORATORY · PI DOS SANTOS, CAMILA · 2020 to 2024
$1.8M
Defining the Role of BPTF Epigenetic Reader Domains in CancerR01GM121414 · NIGMS · UNIVERSITY OF MINNESOTA · PI POMERANTZ, WILLIAM CHARLES KRAUSE · 2017 to 2020
$1.3M
NCI NIH HHS P30 CA045508NCI NIH HHS P30 CA076292NCI NIH HHS R01 CA248158NCRR NIH HHS S10 RR029205NIA NIH HHS R01 AG069727NIGMS NIH HHS P30 GM124165NIGMS NIH HHS R01 GM121414NIGMS NIH HHS R35 GM118047NIGMS NIH HHS R35 GM140837NIGMS NIH HHS R35 GM142772NIGMS NIH HHS T32 GM132029
6 · The paper itself

Abstract

The nucleosome remodeling factor (NURF) alters chromatin accessibility through interactions with its largest subunit,the bromodomain PHD finger transcription factor BPTF. BPTF is overexpressed in several cancers and is an emerging anticancer target. Targeting the BPTF bromodomain presents a potential strategy for its inhibition and the evaluation of its functional significance; however, inhibitor development for BPTF has lagged behind those of other bromodomains. Here we describe the development of pyridazinone-based BPTF inhibitors. The lead compound,

Indexed as

Amino Acid SequenceAnimalsAntigens, NuclearAntineoplastic AgentsBromodomain Containing ProteinsCell Line, TumorDrug DesignMiceMolecular StructureNerve Tissue ProteinsProtein DomainsPyridazinesStructure-Activity RelationshipTranscription FactorsAntigens, NuclearAntineoplastic AgentsBromodomain Containing Proteinsfetal Alzheimer antigenNerve Tissue ProteinsPyridazinesTranscription Factors

Identifiers

PMID34515477
PMCPMC9012132
OpenAlexW3201259715

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.