Evidence map›Paper›PMID 34514645›Full record

ArticleThe Plant journal : for cell and molecular biology2021

Cytochrome P450-catalyzed biosynthesis of furanoditerpenoids in the bioenergy crop switchgrass (Panicum virgatum L.).

Andrew Muchlinski, Meirong Jia, Kira Tiedge, Jason S Fell, Kyle A Pelot, Lisl Chew, Danielle Davisson, Yuxuan Chen, Justin Siegel, John T Lovell and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Andrew MuchlinskiDepartment of Plant Biology, University of California - Davis, Davis, California, 95616, USA.
Meirong JiaDepartment of Plant Biology, University of California - Davis, Davis, California, 95616, USA.
Kira TiedgeDepartment of Plant Biology, University of California - Davis, Davis, California, 95616, USA.
Jason S FellGenome Center, University of California - Davis, Davis, California, 95616, USA.
Kyle A PelotDepartment of Plant Biology, University of California - Davis, Davis, California, 95616, USA.
Lisl ChewDepartment of Plant Biology, University of California - Davis, Davis, California, 95616, USA.
Danielle DavissonDepartment of Plant Biology, University of California - Davis, Davis, California, 95616, USA.
Yuxuan ChenDepartment of Plant Biology, University of California - Davis, Davis, California, 95616, USA.
Justin SiegelGenome Center, University of California - Davis, Davis, California, 95616, USA.
John T LovellGenome Sequencing Center, Hudson Alpha Institute for Biotechnology, Huntsville, Alabama, 35806, USA.
Philipp ZerbeDepartment of Plant Biology, University of California - Davis, Davis, California, 95616, USA.ORCID 0000-0001-5163-9523
University of California, Davis · USHudsonAlpha Institute for Biotechnology · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Specialized diterpenoid metabolites are important mediators of plant-environment interactions in monocot crops. To understand metabolite functions in plant environmental adaptation that ultimately can enable crop improvement strategies, a deeper knowledge of the underlying species-specific biosynthetic pathways is required. Here, we report the genomics-enabled discovery of five cytochrome P450 monooxygenases (CYP71Z25-CYP71Z29) that form previously unknown furanoditerpenoids in the monocot bioenergy crop Panicum virgatum (switchgrass). Combinatorial pathway reconstruction showed that CYP71Z25-CYP71Z29 catalyze furan ring addition directly to primary diterpene alcohol intermediates derived from distinct class II diterpene synthase products. Transcriptional co-expression patterns and the presence of select diterpenoids in switchgrass roots support the occurrence of P450-derived furanoditerpenoids in planta. Integrating molecular dynamics, structural analysis and targeted mutagenesis identified active site determinants that contribute to the distinct catalytic specificities underlying the broad substrate promiscuity of CYP71Z25-CYP71Z29 for native and non-native diterpenoids.

Indexed as

Biosynthetic PathwaysBiocatalysisBiological ProductsCatalytic DomainCytochrome P-450 Enzyme SystemDiterpenesGenome, PlantPanicumPlant ProteinsPlant RootsBiological ProductsCytochrome P-450 Enzyme SystemDiterpenesPlant Proteinscytochrome P450 monooxygenasediterpenoid biosynthesisPanicum virgatumplant natural productsplant specialized metabolism

Identifiers

PMID34514645
PMCPMC9292899
OpenAlexW3201655808

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.