Evidence map›Paper›PMID 34514088›Full record

ArticleSmall methods2021

Methods to Identify Immunogenic Peptides in SARS-CoV-2 Spike and Protective Monoclonal Antibodies in COVID-19 Patients.

Lili Li, Meiling Gao, Jie Li, Shulong Zu, Yanan Wang, Chunfeng Chen, Dingyi Wan, Jing Duan, Roghiyh Aliyari, Jingfeng Wang and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Small methods, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Identification of natural peptides from "PlantPepDB" database as anti-SARS-CoV-2 agents: A protein-protein docking approach.Phytomedicine plus : international journal of phytotherapy and phytopharmacology · 2023
    Article
  3. Immunology of SARS-CoV-2 infection and vaccination.Clinica chimica acta; international journal of clinical chemistry · 2023
    Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 8 institutions in 3 countries.

Lili LiCenter for Systems Medicine Institute of Basic Medical Sciences Chinese Academy of Medical Sciences & Peking Union Medical College Beijing 100005 China.
Meiling GaoCenter for Systems Medicine Institute of Basic Medical Sciences Chinese Academy of Medical Sciences & Peking Union Medical College Beijing 100005 China.
Jie LiDepartment of Laboratory Medicine TaiHe Hospital Hubei University of Medicine Shiyan Hubei 442000 China.
Shulong ZuCenter for Systems Medicine Institute of Basic Medical Sciences Chinese Academy of Medical Sciences & Peking Union Medical College Beijing 100005 China.
Yanan WangSuzhou Func Biotech Inc. Suzhou Jiangsu 215123 China.
Chunfeng ChenSuzhou Func Biotech Inc. Suzhou Jiangsu 215123 China.
Dingyi WanAtaGenix Laboratories (Wuhan) Co., Ltd. Wuhan Hubei 430075 China.
Jing DuanAtaGenix Laboratories (Wuhan) Co., Ltd. Wuhan Hubei 430075 China.
Roghiyh AliyariDepartment of Microbiology Immunology & Molecular Genetics University of California Los Angeles Los Angeles CA 90095 USA.
Jingfeng WangCenter for Systems Medicine Institute of Basic Medical Sciences Chinese Academy of Medical Sciences & Peking Union Medical College Beijing 100005 China.
Jicai ZhangDepartment of Laboratory Medicine TaiHe Hospital Hubei University of Medicine Shiyan Hubei 442000 China.
Yujie JinDepartment of Laboratory Medicine TaiHe Hospital Hubei University of Medicine Shiyan Hubei 442000 China.
Weijin HuangDivision of HIV/AIDS and Sex-Transmitted Virus Vaccines Institute for Biological Product Control National Institutes for Food and Drug Control (NIFDC) Beijing 102629 China.
Xiaoxia JinAffiliated Tumour Hospital of Nantong University Nantong 226000 China.
Minxin ShiAffiliated Tumour Hospital of Nantong University Nantong 226000 China.
Youchun WangDivision of HIV/AIDS and Sex-Transmitted Virus Vaccines Institute for Biological Product Control National Institutes for Food and Drug Control (NIFDC) Beijing 102629 China.
Cheng-Feng QinDepartment of Virology State Key Laboratory of Pathogen and Biosecurity Beijing Institute of Microbiology and Epidemiology AMMS Beijing 100071 China.
Heng YangCenter for Systems Medicine Institute of Basic Medical Sciences Chinese Academy of Medical Sciences & Peking Union Medical College Beijing 100005 China.ORCID https://orcid.org/0000-0002-1491-4490
Genhong ChengDepartment of Microbiology Immunology & Molecular Genetics University of California Los Angeles Los Angeles CA 90095 USA.
Chinese Academy of Medical Sciences & Peking Union Medical College · CNHubei University of Medicine · CNNational Institutes for Food and Drug Control · CNUniversity of California, Los Angeles · USNantong University · CNWuhan Science and Technology Bureau · CNInstitute of Microbiology · BYNanopolis Suzhou (China) · CN

Funding

Virology CoreP30AI028697 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ANTON, PETER A · 1991 to 2018
$39.9M
Viral Mediated Type I Interferon InductionR01AI069120 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CHENG, GENHONG · 2006 to 2021
$6.0M
Genetic evolution, pathogenesis and immune responses in mother to child transmission of ZIKVR01AI140718 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CHENG, GENHONG, JUNG, JAE U · 2018 to 2022
$3.8M
Mechanisms of Biodefense By Toll-Like ReceptorsR01AI056154 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CHENG, GENHONG · 2004 to 2014
$3.7M
NIAID NIH HHS P30 AI028697NIAID NIH HHS R01 AI056154NIAID NIH HHS R01 AI069120NIAID NIH HHS R01 AI140718
6 · The paper itself

Abstract

The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection and the associated COVID-19 diseases are an emerging threat to global public health. Although considerable scientific research on the immune, especially antibody, responses to SARS-CoV-2 infection have been conducted, additional dominant epitopes and protective antibodies are needed for diagnosis and treatment of COVID-19 patients. Here, two different phage libraries are used to identify immunogenic epitopes across the spike protein and monoclonal antibodies from COVID-19 patients. Three peptides are further characterized in the receptor-binding motif (RBM) and measured their antibody levels in COVID-19 patients, from which one identifies one most immunodominant epitope with the highest antibody response in COVID-19 patients and in immunized mice. More importantly, monoclonal antibodies specifically binding to this peptide isolated from COVID-19 patients have therapeutic potential to neutralize SARS-CoV-2 infection. Thus, the approaches to systemically identify immunogenic peptides and directly identify human monoclonal antibodies from patients will provide useful diagnostic and therapeutic tools for COVID-19 and other emerging infectious diseases.

Indexed as

coronavirus disease 2019immunogenic peptidesneutralizing antibodyssevere acute respiratory syndrome coronavirus 2spike proteins

Identifiers

PMID34514088
PMCPMC8420616
OpenAlexW3173716334

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.