Evidence map›Paper›PMID 34514084›Full record

ArticleAdvanced materials technologies2021

SARS-CoV-2 RNA Detection by a Cellphone-Based Amplification-Free System with CRISPR/CAS-Dependent Enzymatic (CASCADE) Assay.

Filipe S R Silva, Eda Erdogmus, Ahmed Shokr, Hemanth Kandula, Prudhvi Thirumalaraju, Manoj K Kanakasabapathy, Joseph M Hardie, Luis G C Pacheco, Jonathan Z Li, Daniel R Kuritzkes and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Advanced materials technologies, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
6.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 81 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Filipe S R SilvaDivision of Engineering in Medicine Department of Medicine Brigham and Women's Hospital Harvard Medical School Boston MA 02139 USA.
Eda ErdogmusDivision of Engineering in Medicine Department of Medicine Brigham and Women's Hospital Harvard Medical School Boston MA 02139 USA.
Ahmed ShokrDivision of Engineering in Medicine Department of Medicine Brigham and Women's Hospital Harvard Medical School Boston MA 02139 USA.
Hemanth KandulaDivision of Engineering in Medicine Department of Medicine Brigham and Women's Hospital Harvard Medical School Boston MA 02139 USA.
Prudhvi ThirumalarajuDivision of Engineering in Medicine Department of Medicine Brigham and Women's Hospital Harvard Medical School Boston MA 02139 USA.
Manoj K KanakasabapathyDivision of Engineering in Medicine Department of Medicine Brigham and Women's Hospital Harvard Medical School Boston MA 02139 USA.
Joseph M HardieDivision of Engineering in Medicine Department of Medicine Brigham and Women's Hospital Harvard Medical School Boston MA 02139 USA.
Luis G C PachecoDivision of Engineering in Medicine Department of Medicine Brigham and Women's Hospital Harvard Medical School Boston MA 02139 USA.
Jonathan Z LiHarvard Medical School Boston MA 02115 USA.
Daniel R KuritzkesHarvard Medical School Boston MA 02115 USA.
Hadi ShafieeDivision of Engineering in Medicine Department of Medicine Brigham and Women's Hospital Harvard Medical School Boston MA 02139 USA.ORCID https://orcid.org/0000-0003-2240-7648
Brigham and Women's Hospital · USUniversidade Federal da Bahia · BR

Funding

Boston Biomedical Innovation CenterU54HL119145 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI GOLAN, DAVID E., LOSCALZO, JOSEPH · 2013 to 2021
$18.8M
Microchip for HBV testing using HIV-infected blood samplesR01AI138800 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI SHAFIEE, HADI · 2019 to 2023
$3.1M
Sensitive and quantitative point-of-care viral load testing on paperR01AI118502 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI SHAFIEE, HADI · 2016 to 2020
$2.2M
A mobile health diagnostic device for HIV self-testingR61AI140489 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI SHAFIEE, HADI · 2019 to 2021
$1.6M
NHLBI NIH HHS U54 HL119145NIAID NIH HHS R01 AI118502NIAID NIH HHS R01 AI138800NIAID NIH HHS R61 AI140489
6 · The paper itself

Abstract

CRISPR (Clustered regularly interspaced short palindromic repeats)-based diagnostic technologies have emerged as a promising alternative to accelerate delivery of SARS-CoV-2 molecular detection at the point of need. However, efficient translation of CRISPR-diagnostic technologies to field application is still hampered by dependence on target amplification and by reliance on fluorescence-based results readout. Herein, an amplification-free CRISPR/Cas12a-based diagnostic technology for SARS-CoV-2 RNA detection is presented using a smartphone camera for results readout. This method, termed Cellphone-based amplification-free system with CRISPR/CAS-dependent enzymatic (CASCADE) assay, relies on mobile phone imaging of a catalase-generated gas bubble signal within a microfluidic channel and does not require any external hardware optical attachments. Upon specific detection of a SARS-CoV-2 reverse-transcribed DNA/RNA heteroduplex target (orf1ab) by the ribonucleoprotein complex, the transcleavage collateral activity of the Cas12a protein on a Catalase:ssDNA probe triggers the bubble signal on the system. High analytical sensitivity in signal detection without previous target amplification (down to 50 copies µL

Indexed as

catalaseCRISPRmobile phoneSARS‐CoV‐2viral diagnostics

Identifiers

PMID34514084
PMCPMC8420437
OpenAlexW3185485316

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.