Evidence map›Paper›PMID 34513323›Full record

ArticlePeerJ2021

João Luiz de Lemos Padilha Pitta, Crhisllane Rafaele Dos Santos Vasconcelos, Gabriel da Luz Wallau, Túlio de Lima Campos, Antonio Mauro Rezende

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

João Luiz de Lemos Padilha Pitta *Microbiology Department, Aggeu Magalhães Institute-FIOCRUZ/PE, Recife, PE, Brasil.
Crhisllane Rafaele Dos Santos Vasconcelos *Genetics Department, Federal University of Pernambuco, Recife, PE, Brasil.
Gabriel da Luz WallauEntomology Department, Aggeu Magalhães Institute-FIOCRUZ/PE, Recife, PE, Brasil.ORCID 0000-0002-1419-5713
Túlio de Lima CamposBioinformatics Platform, Aggeu Magalhães Institute-FIOCRUZ/PE, Recife, PE, Brasil.ORCID 0000-0003-0446-848X
Antonio Mauro RezendeMicrobiology Department, Aggeu Magalhães Institute-FIOCRUZ/PE, Recife, PE, Brasil.ORCID 0000-0003-4775-1779
Fundação Oswaldo Cruz · BRUniversidade Federal de Pernambuco · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe ZIKA virus (ZIKV) belongs to the

resultsApplying Random Forest and Support Vector Machine (SVM) algorithms, we performed predictions of PPI between two ZIKV strains and human proteomes. The consensus number of predictions of both algorithms was 17,223 pairs of proteins. Functional enrichment analyses were executed with the predicted networks to access the biological meanings of the protein interactions. Some pathways related to viral infection and neurological development were found for both ZIKV strains in the enrichment analysis, but the JAK-STAT pathway was observed only for strain PE243 when compared with the FSS13025 strain.

conclusionsThe consensus network of PPI predictions made by Random Forest and SVM algorithms allowed an enrichment analysis that corroborates many aspects of ZIKV infection. The enrichment results are mainly related to viral infection, neuronal development, and immune response, and presented differences among the two compared ZIKV strains. Strain PE243 presented more predicted interactions between proteins from the JAK-STAT signaling pathway, which could lead to a more inflammatory immune response when compared with the FSS13025 strain. These results show that the methodology employed in this study can potentially reveal new interactions between the ZIKV and human cells.

Indexed as

Machine learningMetabolic pathwayProtein-protein interactionsZika virus

Identifiers

PMID34513323
PMCPMC8395582
OpenAlexW3194722675

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.