Evidence map›Paper›PMID 34513214›Full record

ArticleBiomedical optics express2021

A compact photonic resonator absorption microscope for point of care digital resolution nucleic acid molecular diagnostics.

Shreya Ghosh, Nantao Li, Yanyu Xiong, Young-Gu Ju, Michael P Rathslag, Ege G Onal, Erika Falkiewicz, Manish Kohli, Brian T Cunningham

Erratum issuedAbstract read
In one paragraph

Article in Biomedical optics express, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

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  18. Microscopies Enabled by Photonic Metamaterials.Sensors (Basel, Switzerland) · 2022
    Review
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  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Shreya GhoshHolonyak Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Nantao LiHolonyak Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Yanyu XiongHolonyak Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Young-Gu JuDepartment of Physics Education, Kyungpook National University, 80 Daehak-ro, Sangyeok-dong, Buk-gu, Daegu, Republic of Korea.
Michael P RathslagDepartment of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Ege G OnalDepartment of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Erika FalkiewiczSchool of Integrative Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Manish KohliHuntsman Cancer Institute, University of Utah, Salt Lake City, UT 84112, USA.
Brian T CunninghamHolonyak Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.

Funding

Exosome separation and digital resolution detection of blood-based nucleic acid biomarkers for noninvasive therapeutic diagnostics in cancerR01EB029805 · NIBIB · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI CUNNINGHAM, BRIAN T., DEMIRCI, UTKAN · 2020 to 2023
$2.1M
Daily Quantification of Cancer-Associated Exosomal miRNA in Patient Blood by Photonic Crystal-Enhanced Quantum Dot EmissionR01CA227699 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI KOHLI, MANISH, SMITH, ANDREW MICHAEL · 2018 to 2022
$1.8M
NCI NIH HHS R01 CA227699NIBIB NIH HHS R01 EB029805
6 · The paper itself

Abstract

Rapid, sensitive, and selective detection of nucleic acid biomarkers for health diagnostic applications becomes feasible for point of care scenarios when the detection instrument is inexpensive, simple, and robust. Here, we report the design, implementation, and characterization of a point of care instrument for photonic resonator absorption microscopy (PRAM) that takes advantage of resonant optical coupling between plasmonic gold nanoparticle tags and a photonic crystal (PC) surface. Matching the PC resonant wavelength to the gold nanoparticle's surface plasmon wavelength generates localized and efficient quenching of the PC resonant reflection intensity, resulting in the ability to clearly detect and count individual gold nanoparticles when they are captured on the PC surface. Surface-captured nanoparticles are observed by illuminating the PC at normal incidence with polarized light from a low-intensity red LED, and recording of PC reflected intensity on an inexpensive CMOS image sensor. A contrast limited adaptive histogram equalization (CLAHE) image processing algorithm was applied to derive counts of captured nanoparticles. The instrument is utilized in the context of an activate capture + digital counting (AC + DC) assay for a specific miRNA sequence, using nucleic acid toehold probes applied to gold nano-urchin (AuNU) nanoparticles to achieve 160 aM detection limits in a 30 min. assay.

Identifiers

PMID34513214
PMCPMC8407813

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.