ArticleFrontiers in plant science2021
Genome-Wide Association Study of Waterlogging Tolerance in Barley (
Article in Frontiers in plant science, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed, 41 citations in OpenAlex.
- Integrating natural variation through GWAS - genetics of drought and flood tolerance in grass pea reveal independent yet interconnected mechanisms.BMC plant biology · 2026Article
- Strong Root System Enhances Waterlogging Resilience in Barley (Plants (Basel, Switzerland) · 2026Article
- Genome-wide association studies and candidate gene identification under salinity stress in bread wheat (Frontiers in plant science · 2026Article
- Harnessing novel genetic markers for scald resistance from gene bank spring barley genotypes.BMC plant biology · 2025Article
- Genetic insights into the synergistic effects of nano-iron on yield, quality, and antioxidant defense in barley under salt stress.Molecular genetics and genomics : MGG · 2025Article
- Genotyping-by-sequencing derived SNP markers reveal genetic diversity and population structure ofFrontiers in plant science · 2025Article
- Genetic control of root architectural traits under drought stress in spring barley (Hordeum vulgare L.).The plant genome · 2024Article
- Genetic diversity and candidate genes for transient waterlogging tolerance in mungbean at the germination and seedling stages.Frontiers in plant science · 2024Article
- Response to Waterlogging Stress in Wild and Domesticated Accessions of Timothy (Plants (Basel, Switzerland) · 2023Article
- Use of GWAS analysis in deciphering the inability of barley seeds to germinate after hypoxia.Journal of experimental botany · 2023Article
- Multi-Omics Pipeline and Omics-Integration Approach to Decipher Plant's Abiotic Stress Tolerance Responses.Genes · 2023Review
- QTL mapping of shoot and seed traits impacted by Drought in Barley using a recombinant inbred line Population.BMC plant biology · 2023Article
- Genome-Wide Association Study Identified Novel SNPs Associated with Chlorophyll Content in Maize.Genes · 2023Article
- Silver lining to a climate crisis in multiple prospects for alleviating crop waterlogging under future climates.Nature communications · 2023Article
- Identification of sources of resistance to scald (Frontiers in plant science · 2023Article
- Phenotyping for waterlogging tolerance in crops: current trends and future prospects.Journal of experimental botany · 2022Review
- Genome-Wide Association Study Reveals Marker Trait Associations (MTA) for Waterlogging-Triggered Adventitious Roots and Aerenchyma Formation in Barley.International journal of molecular sciences · 2022Article
- Genome-wide association scan and transcriptome analysis reveal candidate genes for waterlogging tolerance in cultivated barley.Frontiers in plant science · 2022Article
- Marker-trait association analyses revealed major novel QTLs for grain yield and related traits in durum wheat.Frontiers in plant science · 2022Article
Corrections and comments
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Authors and funding
6 authors at 3 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Waterlogging is one of the main abiotic stresses severely reducing barley grain yield. Barley breeding programs focusing on waterlogging tolerance require an understanding of genetic loci and alleles in the current germplasm. In this study, 247 worldwide spring barley genotypes grown under controlled field conditions were genotyped with 35,926 SNPs with minor allele frequency (MAF) > 0.05. Significant phenotypic variation in each trait, including biomass, spikes per plant, grains per plant, kernel weight per plant, plant height and chlorophyll content, was observed. A genome-wide association study (GWAS) based on linkage disequilibrium (LD) for waterlogging tolerance was conducted. Population structure analysis divided the population into three subgroups. A mixed linkage model using both population structure and kinship matrix (Q+K) was performed. We identified 17 genomic regions containing 51 significant waterlogging-tolerance-associated markers for waterlogging tolerance response, accounting for 5.8-11.5% of the phenotypic variation, with a majority of them localized on chromosomes 1H, 2H, 4H, and 5H. Six novel QTL were identified and eight potential candidate genes mediating responses to abiotic stresses were located at QTL associated with waterlogging tolerance. To our awareness, this is the first GWAS for waterlogging tolerance in a worldwide barley collection under controlled field conditions. The marker-trait associations could be used in the marker-assisted selection of waterlogging tolerance and will facilitate barley breeding.
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