Evidence map›Paper›PMID 34510303›Full record

ArticleAntonie van Leeuwenhoek2021

Effects of organic acids on the chemotaxis profiles and biocontrol traits of antagonistic bacterial endophytes against root-rot disease in Panax notoginseng.

Li Ma, Wu-Qin Wang, Rui Shi, Xue-Mei Zhang, Xin Li, Yu-Sen Yang, Ming He Mo

Abstract read
PubMed Publisher
In one paragraph

Article in Antonie van Leeuwenhoek, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Changes in the Histology of Walnut (International journal of molecular sciences · 2023
    Article
  5. The genome ofFrontiers in microbiology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Li MaState Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan University, The Cuihu North Road No. 2, Kunming, 650091, China.
Wu-Qin WangState Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan University, The Cuihu North Road No. 2, Kunming, 650091, China.
Rui ShiState Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan University, The Cuihu North Road No. 2, Kunming, 650091, China.
Xue-Mei ZhangState Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan University, The Cuihu North Road No. 2, Kunming, 650091, China.
Xin LiState Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan University, The Cuihu North Road No. 2, Kunming, 650091, China.
Yu-Sen YangState Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan University, The Cuihu North Road No. 2, Kunming, 650091, China.
Ming He MoState Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan University, The Cuihu North Road No. 2, Kunming, 650091, China. minghemo@163.com.
Yunnan University · CN

Funding

NSFC 31960022, 31870091the Department of Science and Technology of Yunnan Province 2019ZG00901,YNWR-CYJS-2019-042the Department of Science and Technology of Yunnan Province 202001BB050072
6 · The paper itself

Abstract

Understanding the role of chemotaxis in ecological interactions between plants and microbes in the rhizosphere is necessary to optimize biocontrol strategies targeting plant soil-borne diseases. Therefore, we examined and profiled the antagonistic endophytic bacteria (AEB) population with chemotaxis potential in the medicinal plant Panax notoginseng using a cheA gene-based approach coupled with 16S rRNA sequencing. Phylogenetic analysis of the chemotactic AEB (CAEB) community in P. notoginseng enabled the identification of 56 CAEB strains affiliated with 30 species of Actinobacteria, Firmicutes, and Proteobacteria; Firmicutes, especially Bacillus, were predominant. We then systematically quantified the chemotactic response profiles of CAEB toward five organic acid (OA) attractants: citric acid, fumaric acid (FA), malic acid, oxalic acid, and succinic acid. Further hierarchical cluster analysis revealed that the chemotaxis of CAEB to the same attractant exhibited different patterns among not only genera but also species and even strains of the same species. Following chemotaxis and hierarchical analysis, we selected the strongest chemoattractant, fumaric acid (FA), as the target for evaluating the effects of OAs on the representative CAEB strain Bacillus amyloliquefaciens subsp. plantarum YP1. Application of FA significantly stimulated the chemotaxis ability and growth of YP1, and increased the transcript levels of cheA and biocontrol-related genes in YP1. This is the first study to characterise the diversity of chemotaxis profiles toward OAs in natural bacterial assemblages of P. notoginseng and to highlight how FA promotes the biocontrol-related traits of P. notoginseng-associated CAEB.

Indexed as

EndophytesPanax notoginsengBacillusBacteriaChemotaxisPhylogenyPlant RootsRNA, Ribosomal, 16SRNA, Ribosomal, 16SBiocontrol traitsChemotactic antagonistic endophytic bacteriaChemotaxis profileOrganic acidsPanax notoginsengPromotion effect

Identifiers

PMID34510303
OpenAlexW3159753619

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.