Evidence map›Paper›PMID 34508350›Full record

ArticleNucleic acids research2021

Small circular interfering RNAs (sciRNAs) as a potent therapeutic platform for gene-silencing.

Hartmut Jahns, Rohan Degaonkar, Peter Podbevsek, Swati Gupta, Anna Bisbe, Krishna Aluri, John Szeto, Pawan Kumar, Sarah LeBlanc, Tim Racie and 9 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
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  8. Article
  9. Review
  10. Chemical Modifications in Nucleic Acid Therapeutics.Methods in molecular biology (Clifton, N.J.) · 2025
    Review
  11. Article
  12. Article
  13. Optimal design of synthetic circular RNAs.Experimental & molecular medicine · 2024
    Review
  14. Article
  15. Article
  16. Structural Modifications of siRNA Improve Its Performance In Vivo.International journal of molecular sciences · 2023
    Review
  17. Review
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 3 institutions in 2 countries.

Hartmut JahnsAlnylam Pharmaceuticals, Inc., Cambridge, MA 02142, USA.
Rohan DegaonkarAlnylam Pharmaceuticals, Inc., Cambridge, MA 02142, USA.
Peter PodbevsekSlovenian NMR Center, National Institute of Chemistry, Hajdrihova 19, SI-1001 Ljubljana, Slovenia, EU.ORCID 0000-0002-2563-4507
Swati GuptaAlnylam Pharmaceuticals, Inc., Cambridge, MA 02142, USA.ORCID 0000-0002-0312-2834
Anna BisbeAlnylam Pharmaceuticals, Inc., Cambridge, MA 02142, USA.
Krishna AluriAlnylam Pharmaceuticals, Inc., Cambridge, MA 02142, USA.
John SzetoAlnylam Pharmaceuticals, Inc., Cambridge, MA 02142, USA.
Pawan KumarAlnylam Pharmaceuticals, Inc., Cambridge, MA 02142, USA.ORCID 0000-0001-7936-4613
Sarah LeBlancAlnylam Pharmaceuticals, Inc., Cambridge, MA 02142, USA.
Tim RacieAlnylam Pharmaceuticals, Inc., Cambridge, MA 02142, USA.
Christopher R BrownAlnylam Pharmaceuticals, Inc., Cambridge, MA 02142, USA.ORCID 0000-0001-6076-4035
Adam CastorenoAlnylam Pharmaceuticals, Inc., Cambridge, MA 02142, USA.
Dale C GuentherAlnylam Pharmaceuticals, Inc., Cambridge, MA 02142, USA.
Vasant JadhavAlnylam Pharmaceuticals, Inc., Cambridge, MA 02142, USA.ORCID 0000-0002-6666-0250
Martin A MaierAlnylam Pharmaceuticals, Inc., Cambridge, MA 02142, USA.
Janez PlavecSlovenian NMR Center, National Institute of Chemistry, Hajdrihova 19, SI-1001 Ljubljana, Slovenia, EU.ORCID 0000-0003-1570-8602
Martin EgliDepartment of Biochemistry, School of Medicine, Vanderbilt University, Nashville, TN 37232, USA.ORCID 0000-0003-4145-356X
Muthiah ManoharanAlnylam Pharmaceuticals, Inc., Cambridge, MA 02142, USA.ORCID 0000-0002-7931-1172
Ivan ZlatevAlnylam Pharmaceuticals, Inc., Cambridge, MA 02142, USA.ORCID 0000-0003-2797-3032
Alnylam Pharmaceuticals (United States) · USNational Institute of Chemistry · SIVanderbilt University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In order to achieve efficient therapeutic post-transcriptional gene-silencing mediated by the RNA interference (RNAi) pathway, small interfering RNAs (siRNAs) must be chemically modified. Several supra-RNA structures, with the potential to stabilize siRNAs metabolically have been evaluated for their ability to induce gene silencing, but all have limitations or have not been explored in therapeutically relevant contexts. Covalently closed circular RNA transcripts are prevalent in eukaryotes and have potential as biomarkers and disease targets, and circular RNA mimics are being explored for use as therapies. Here we report the synthesis and evaluation of small circular interfering RNAs (sciRNAs). To synthesize sciRNAs, a sense strand functionalized with the trivalent N-acetylgalactosamine (GalNAc) ligand and cyclized using 'click' chemistry was annealed to an antisense strand. This strategy was used for synthesis of small circles, but could also be used for synthesis of larger circular RNA mimics. We evaluated various sciRNA designs in vitro and in vivo. We observed improved metabolic stability of the sense strand upon circularization and off-target effects were eliminated. The 5'-(E)-vinylphosphonate modification of the antisense strand resulted in GalNAc-sciRNAs that are potent in vivo at therapeutically relevant doses. Physicochemical studies and NMR-based structural analysis, together with molecular modeling studies, shed light on the interactions of this novel class of siRNAs, which have a partial duplex character, with the RNAi machinery.

Indexed as

Gene SilencingRNA, CircularRNA InterferenceRNA, Small InterferingAnimalsFemaleMiceMice, Inbred C57BLRNA, CircularRNA, Small Interfering

Identifiers

PMID34508350
PMCPMC8501968
OpenAlexW3196620340

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.