Evidence map›Paper›PMID 34506477›Full record

ArticlePLoS computational biology2021

Networks of Causal Linkage Between Eigenmodes Characterize Behavioral Dynamics of Caenorhabditis elegans.

Erik Saberski, Antonia K Bock, Rachel Goodridge, Vitul Agarwal, Tom Lorimer, Scott A Rifkin, George Sugihara

Abstract read
In one paragraph

Article in PLoS computational biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Erik SaberskiScripps Institution of Oceanography, University of California, San Diego, La Jolla, California, United States of America.ORCID 0000-0002-6475-6187
Antonia K BockScripps Institution of Oceanography, University of California, San Diego, La Jolla, California, United States of America.ORCID 0000-0003-0382-7700
Rachel GoodridgeDivision of Biological Sciences, University of California, San Diego, La Jolla, California, United States of America.
Vitul AgarwalScripps Institution of Oceanography, University of California, San Diego, La Jolla, California, United States of America.ORCID 0000-0002-1523-9044
Tom LorimerScripps Institution of Oceanography, University of California, San Diego, La Jolla, California, United States of America.
Scott A RifkinDivision of Biological Sciences, University of California, San Diego, La Jolla, California, United States of America.ORCID 0000-0001-8476-3256
George SugiharaScripps Institution of Oceanography, University of California, San Diego, La Jolla, California, United States of America.ORCID 0000-0002-2863-6946

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Behavioral phenotyping of model organisms has played an important role in unravelling the complexities of animal behavior. Techniques for classifying behavior often rely on easily identified changes in posture and motion. However, such approaches are likely to miss complex behaviors that cannot be readily distinguished by eye (e.g., behaviors produced by high dimensional dynamics). To explore this issue, we focus on the model organism Caenorhabditis elegans, where behaviors have been extensively recorded and classified. Using a dynamical systems lens, we identify high dimensional, nonlinear causal relationships between four basic shapes that describe worm motion (eigenmodes, also called "eigenworms"). We find relationships between all pairs of eigenmodes, but the timescales of the interactions vary between pairs and across individuals. Using these varying timescales, we create "interaction profiles" to represent an individual's behavioral dynamics. As desired, these profiles are able to distinguish well-known behavioral states: i.e., the profiles for foraging individuals are distinct from those of individuals exhibiting an escape response. More importantly, we find that interaction profiles can distinguish high dimensional behaviors among divergent mutant strains that were previously classified as phenotypically similar. Specifically, we find it is able to detect phenotypic behavioral differences not previously identified in strains related to dysfunction of hermaphrodite-specific neurons.

Indexed as

Models, BiologicalAnimalsBehavior, AnimalCaenorhabditis elegans

Identifiers

PMID34506477
PMCPMC8494368

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.