ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2021
A high-quality chromosome-level genome of wild Rosa rugosa.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
- Pangenomic analyses of rose uncover widespread structure variation and empower genomics-directed breeding.Nature genetics · 2026Article
- Advancing ornamental plant breeding through genomic technologies: opportunities, challenges, and future directions.Functional & integrative genomics · 2025Review
- Inferring complex evolutionary history of the closely related East Asian wild roses in Rosa sect. Synstylae (Rosaceae) based on genomic evidence from conserved orthologues.Annals of botany · 2025Article
- Integrated physiological and transcriptomic analysis reveals the key pathways ofFrontiers in plant science · 2025Article
- RrWRKY1, a Transcription Factor, Is Involved in the Regulation of the Salt Stress Response inPlants (Basel, Switzerland) · 2024Article
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- Gene-flow investigation between garden and wild roses planted in close distance.Plant biotechnology (Tokyo, Japan) · 2023Article
- Two High-QualityInternational journal of molecular sciences · 2023Article
- Simple Sequence Repeat Fingerprint Identification of Essential-Oil-BearingBiomolecules · 2023Article
- Resequencing of Rosa rugosa accessions revealed the history of population dynamics, breed origin, and domestication pathways.BMC plant biology · 2023Article
- BOX38, a DNA Marker for Selection of Essential Oil Yield ofBiomolecules · 2023Article
- GT Transcription Factors ofBiology · 2023Article
- RoseAP: an analytical platform for gene function ofFrontiers in plant science · 2023Article
- Article
- The identification of theHorticulture research · 2022Article
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Authors and funding
13 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Rosa rugosa is an important shrub with economic, ecological, and pharmaceutical value. A high-quality chromosome-scale genome for R. rugosa sequences was assembled using PacBio and Hi-C technologies. The final assembly genome sequences size was about 407.1 Mb, the contig N50 size was 2.85 Mb, and the scaffold N50 size was 56.6 Mb. More than 98% of the assembled genome sequences were anchored to seven pseudochromosomes (402.9 Mb). The genome contained 37,512 protein-coding genes, with 37,016 genes (98.68%) that were functionally annotated, and 206.67 Mb (50.76%) of the assembled sequences are repetitive sequences. Phylogenetic analyses indicated that R. rugosa diverged from Rosa chinensis ∼6.6 million years ago, and no lineage-specific whole-genome duplication event occurred after divergence from R. chinensis. Chromosome synteny analysis demonstrated highly conserved synteny between R. rugosa and R. chinensis, between R. rugosa and Prunus persica as well. Comparative genome and transcriptome analysis revealed genes related to colour, scent, and environment adaptation. The chromosome-level reference genome provides important genomic resources for molecular-assisted breeding and horticultural comparative genomics research.
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