Evidence map›Paper›PMID 34497388›Full record

ArticleNature2021

A roadmap for the Human Developmental Cell Atlas.

Muzlifah Haniffa, Deanne Taylor, Sten Linnarsson, Bruce J Aronow, Gary D Bader, Roger A Barker, Pablo G Camara, J Gray Camp, Alain Chédotal, Andrew Copp and 24 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed, 1 pooled it
12.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed, 1 synthesis or guideline pooled it, 182 citations in OpenAlex.

  1. Pooled it
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  14. Defects inFrontiers in genetics · 2026
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54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors at 20 institutions in 10 countries.

Muzlifah Haniffa *Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK. m.a.haniffa@ncl.ac.uk.ORCID http://orcid.org/0000-0002-3927-2084
Deanne Taylor *Department of Biomedical and Health Informatics (DBHi), The Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-3302-4610
Sten Linnarsson *Division of Molecular Neurobiology, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden.ORCID http://orcid.org/0000-0002-3491-3444
Bruce J AronowDivision of Developmental Biology and Biomedical Informatics, Cincinnati Children's Hospital Medical Centre, Cincinnati, OH, USA.ORCID http://orcid.org/0000-0001-5109-6514
Gary D BaderThe Donnelly Centre, University of Toronto, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0003-0185-8861
Roger A BarkerWellcome and MRC Cambridge Stem Cell Institute, University of Cambridge, Cambridge, UK.
Pablo G CamaraDepartment of Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
J Gray CampInstitute of Molecular and Clinical Ophthalmology Basel (IOB), University of Basel, Basel, Switzerland.ORCID http://orcid.org/0000-0003-3295-1225
Alain ChédotalINSERM, CNRS, Institut de la Vision, Sorbonne Université, Paris, France.ORCID http://orcid.org/0000-0001-7577-3794
Andrew CoppDevelopmental Biology and Cancer Programme, UCL Great Ormond Street Institute of Child Health, London, UK.ORCID http://orcid.org/0000-0002-2544-9117
Heather C EtcheversMMG, INSERM, U1251, Aix Marseille Université, Marseille, France.ORCID http://orcid.org/0000-0003-0201-3799
Paolo GiacobiniLaboratory of Development and Plasticity of the Neuroendocrine Brain, Inserm, CHU Lille, Lille Neuroscience and Cognition, UMR-S 1172, Université Lille, Lille, France.ORCID http://orcid.org/0000-0002-3075-1441
Berthold GöttgensWellcome and MRC Cambridge Stem Cell Institute, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0001-6302-5705
Guoji GuoCenter for Stem Cell and Regenerative Medicine, Zhejiang University School of Medicine, Hangzhou, China.ORCID http://orcid.org/0000-0002-1716-4621
Ania HupalowskaKlarman Cell Observatory, Broad Institute of Harvard and MIT, Cambridge, MA, USA.
Kylie R JamesWellcome Sanger Institute, Hinxton, UK.
Emily KirbyCentre of Genomics and Policy, McGill University, Montreal, Quebec, Canada.
Arnold KriegsteinDepartment of Neurology, University of California San Francisco (UCSF), San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-5742-2990
Joakim LundebergScience for Life Laboratory, KTH Royal Institute of Technology, Solna, Sweden.ORCID http://orcid.org/0000-0003-4313-1601
John C MarioniCancer Research Institute UK Cambridge Institute, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0001-9092-0852
Kerstin B MeyerWellcome Sanger Institute, Hinxton, UK.ORCID http://orcid.org/0000-0001-5906-1498
Kathy K NiakanFrancis Crick Institute, London, UK.ORCID http://orcid.org/0000-0003-1646-4734
Mats NilssonScience for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.ORCID http://orcid.org/0000-0001-9985-0387
Bayanne OlabiBiosciences Institute, Newcastle University, Newcastle upon Tyne, UK.
Dana Pe'erComputational and Systems Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID http://orcid.org/0000-0002-9259-8817
Aviv RegevKlarman Cell Observatory, Broad Institute of Harvard and MIT, Cambridge, MA, USA.ORCID http://orcid.org/0000-0003-3293-3158
Jennifer RoodKlarman Cell Observatory, Broad Institute of Harvard and MIT, Cambridge, MA, USA.
Orit Rozenblatt-RosenKlarman Cell Observatory, Broad Institute of Harvard and MIT, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-6313-3570
Rahul SatijaNew York Genome Center, New York University, New York, NY, USA.ORCID http://orcid.org/0000-0001-9448-8833
Sarah A TeichmannWellcome Sanger Institute, Hinxton, UK.ORCID http://orcid.org/0000-0002-6294-6366
Barbara TreutleinDepartment of Biosystems Science and Engineering, Eidgenössische Technische Hochschule (ETH) Zurich, Basel, Switzerland.ORCID http://orcid.org/0000-0002-3299-5597
Roser Vento-TormoWellcome Sanger Institute, Hinxton, UK.ORCID http://orcid.org/0000-0002-9870-8474
Simone WebbBiosciences Institute, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0003-3058-8952
Human Cell Atlas Developmental Biological Network
Inserm · FRCentre National de la Recherche Scientifique · FRBroad Institute · USUniversity of Cambridge · GBWellcome Sanger Institute · GBScience for Life Laboratory · SEMiltenyi Biotec (Germany) · DENewcastle University · GBUniversity of Copenhagen · DKWellcome/MRC Cambridge Stem Cell Institute · GBBoard of the Swiss Federal Institutes of Technology · CHChildren's Hospital of Philadelphia · USCincinnati Children's Hospital Medical Center · USGenome Institute of Singapore · SGGreat Ormond Street Hospital · GBKarolinska Institutet · SEMcGill University · CAMemorial Sloan Kettering Cancer Center · USNewcastle College · GBNew York Genome Center · US

Funding

Development and Expansion of the Human Cerebral CortexR35NS097305 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KRIEGSTEIN, ARNOLD · 2017 to 2024
$8.5M
A Cellular Resolution Census of the Developing Human BrainU01MH114825 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HUANG, ERIC J, KRIEGSTEIN, ARNOLD · 2017 to 2021
$6.7M
Medical Research Council MC_PC_17230NIMH NIH HHS U01 MH114825NINDS NIH HHS R35 NS097305Wellcome Trust
6 · The paper itself

Abstract

The Human Developmental Cell Atlas (HDCA) initiative, which is part of the Human Cell Atlas, aims to create a comprehensive reference map of cells during development. This will be critical to understanding normal organogenesis, the effect of mutations, environmental factors and infectious agents on human development, congenital and childhood disorders, and the cellular basis of ageing, cancer and regenerative medicine. Here we outline the HDCA initiative and the challenges of mapping and modelling human development using state-of-the-art technologies to create a reference atlas across gestation. Similar to the Human Genome Project, the HDCA will integrate the output from a growing community of scientists who are mapping human development into a unified atlas. We describe the early milestones that have been achieved and the use of human stem-cell-derived cultures, organoids and animal models to inform the HDCA, especially for prenatal tissues that are hard to acquire. Finally, we provide a roadmap towards a complete atlas of human development.

Indexed as

Cell MovementCell TrackingInformation DisseminationOrganogenesisAdultAnimalsAtlases as TopicCell Culture TechniquesCellsCell SurvivalData VisualizationDevelopmental BiologyEmbryo, MammalianFemaleFetusHumans

Identifiers

PMID34497388
PMCPMC10337595
OpenAlexW3166568332

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.