Evidence map›Paper›PMID 34496831›Full record

ArticleMicrobial cell factories2021

Functional characterization of a highly specific L-arabinose transporter from Trichoderma reesei.

Sami Havukainen, Jonai Pujol-Giménez, Mari Valkonen, Matthias A Hediger, Christopher P Landowski

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Sami HavukainenVTT Technical Research Center of Finland Ltd, Tietotie 2, 02150, Espoo, Finland.
Jonai Pujol-GiménezMembrane Transport Discovery Lab, Department of Nephrology and Hypertension, University of Bern, Freiburgstrasse 15, 3010, Bern, Switzerland.
Mari ValkonenVTT Technical Research Center of Finland Ltd, Tietotie 2, 02150, Espoo, Finland.
Matthias A HedigerMembrane Transport Discovery Lab, Department of Nephrology and Hypertension, University of Bern, Freiburgstrasse 15, 3010, Bern, Switzerland.
Christopher P LandowskiVTT Technical Research Center of Finland Ltd, Tietotie 2, 02150, Espoo, Finland. christopher.landowski@vtt.fi.ORCID http://orcid.org/0000-0003-1775-8646
Tieto (Finland) · FIUniversity of Bern · CHVTT Technical Research Centre of Finland · FI

Funding

Academy of Finland 298392Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung Sinergia #CRSII5 180326
6 · The paper itself

Abstract

backgroundLignocellulose biomass has been investigated as a feedstock for second generation biofuels and other value-added products. Some of the processes for biofuel production utilize cellulases and hemicellulases to convert the lignocellulosic biomass into a range of soluble sugars before fermentation with microorganisms such as yeast Saccharomyces cerevisiae. One of these sugars is L-arabinose, which cannot be utilized naturally by yeast. The first step in L-arabinose catabolism is its transport into the cells, and yeast lacks a specific transporter, which could perform this task.

resultsWe identified Trire2_104072 of Trichoderma reesei as a potential L-arabinose transporter based on its expression profile. This transporter was described already in 2007 as D-xylose transporter XLT1. Electrophysiology experiments with Xenopus laevis oocytes and heterologous expression in yeast revealed that Trire2_104072 is a high-affinity L-arabinose symporter with a K

conclusionsDue to its high affinity for L-arabinose and low inhibition by D-glucose or D-xylose, Trire2_104072 could serve as a good candidate for improving the existing pentose-utilizing yeast strains. The discovery of a highly specific L-arabinose transporter also adds to our knowledge of the primary metabolism of T. reesei. The phenotype of the deletion strain suggests the involvement of other transporters in L-arabinose transport in this species.

Indexed as

Fungal ProteinsMembrane Transport ProteinsHypocrealesSaccharomyces cerevisiaeFungal ProteinsMembrane Transport ProteinsArabinose transporterPentose fermentationTransmembrane transportTrichoderma reesei

Identifiers

PMID34496831
PMCPMC8425032
OpenAlexW3198526188

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.