Evidence map›Paper›PMID 34496202›Full record

ArticleBiochemistry2021

Significant Loop Motions in the SsoPTP Protein Tyrosine Phosphatase Allow for Dual General Acid Functionality.

Justin Pinkston, Jihye Jo, Keith J Olsen, Drake Comer, Charsti A Glaittli, J Patrick Loria, Sean J Johnson, Alvan C Hengge

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Justin PinkstonDepartment of Chemistry and Biochemistry, Utah State University, Logan, Utah 84322-0300, United States.
Jihye JoDepartment of Chemistry, Yale University, 225 Prospect Street, New Haven, Connecticut 06520, United States.
Keith J OlsenDepartment of Chemistry and Biochemistry, Utah State University, Logan, Utah 84322-0300, United States.
Drake ComerDepartment of Chemistry and Biochemistry, Utah State University, Logan, Utah 84322-0300, United States.
Charsti A GlaittliDepartment of Chemistry and Biochemistry, Utah State University, Logan, Utah 84322-0300, United States.
J Patrick LoriaDepartment of Chemistry, Yale University, 225 Prospect Street, New Haven, Connecticut 06520, United States.ORCID 0000-0002-4824-9089
Sean J JohnsonDepartment of Chemistry and Biochemistry, Utah State University, Logan, Utah 84322-0300, United States.ORCID 0000-0001-7992-2494
Alvan C HenggeDepartment of Chemistry and Biochemistry, Utah State University, Logan, Utah 84322-0300, United States.ORCID 0000-0002-5696-2087
Utah State University · USWhitney Museum of American Art · USYale University · US

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Mechanism of catalytic regulation and active site loop motions in related protein tyrosine phosphatasesR01GM112781 · NIGMS · YALE UNIVERSITY · PI LORIA, JOSEPH P · 2015 to 2024
$2.8M
NIGMS NIH HHS P41 GM103393NIGMS NIH HHS R01 GM112781
6 · The paper itself

Abstract

Conformational dynamics are important factors in the function of enzymes, including protein tyrosine phosphatases (PTPs). Crystal structures of PTPs first revealed the motion of a protein loop bearing a conserved catalytic aspartic acid, and subsequent nuclear magnetic resonance and computational analyses have shown the presence of motions, involved in catalysis and allostery, within and beyond the active site. The tyrosine phosphatase from the thermophilic and acidophilic

Indexed as

Amino Acid SequenceCatalysisCatalytic DomainCrystallography, X-RayHumansKineticsModels, MolecularMotionPhosphorylationProtein ConformationProtein Tyrosine PhosphatasesSulfolobus solfataricusProtein Tyrosine Phosphatases

Identifiers

PMID34496202
PMCPMC8561395
OpenAlexW3197500078

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.