Evidence map›Paper›PMID 34495705›Full record

ArticleApplied and environmental microbiology2021

Phenogenomic Characterization of a Newly Domesticated and Novel Species from the Genus

Sarah J Kennedy, Celine Grace F Atkinson, Brooke R Tomlinson, Lauren Hammond, Prahathees Eswara, Bill J Baker, Lindsey N Shaw

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Applied and environmental microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sarah J KennedyDepartment of Cell Biology, Microbiology, and Molecular Biology, University of South Floridagrid.170693.a, Tampa, Florida, USA.
Celine Grace F AtkinsonDepartment of Cell Biology, Microbiology, and Molecular Biology, University of South Floridagrid.170693.a, Tampa, Florida, USA.
Brooke R TomlinsonDepartment of Cell Biology, Microbiology, and Molecular Biology, University of South Floridagrid.170693.a, Tampa, Florida, USA.ORCID 0000-0001-6561-7931
Lauren HammondDepartment of Cell Biology, Microbiology, and Molecular Biology, University of South Floridagrid.170693.a, Tampa, Florida, USA.
Prahathees EswaraDepartment of Cell Biology, Microbiology, and Molecular Biology, University of South Floridagrid.170693.a, Tampa, Florida, USA.ORCID 0000-0003-4430-261X
Bill J BakerDepartment of Chemistry, University of South Floridagrid.170693.a, Tampa, Florida, USA.
Lindsey N ShawDepartment of Cell Biology, Microbiology, and Molecular Biology, University of South Floridagrid.170693.a, Tampa, Florida, USA.ORCID 0000-0002-0629-8990

Funding

The Role and Regulation of Extracellular Proteases in Staphylococcus aureusR01AI124458 · NIAID · UNIVERSITY OF SOUTH FLORIDA · PI SHAW, LINDSEY NEIL · 2017 to 2020
$1.7M
Dissecting the Influence of a C-Terminal Processing Protease on S. aureus PathogenesisR01AI157506 · NIAID · UNIVERSITY OF SOUTH FLORIDA · PI SHAW, LINDSEY NEIL · 2021 to 2024
$1.5M
Natural Product Derived Inhibitors of ESKAPE PathogensR56AI154922 · NIAID · UNIVERSITY OF SOUTH FLORIDA · PI BAKER, BILL J, SHAW, LINDSEY NEIL · 2020 to 2020
$656k
NIAID NIH HHS R01 AI124458NIAID NIH HHS R01 AI157506
6 · The paper itself

Abstract

The concept of bacterial dark matter stems from our inability to culture most microbes and represents a fundamental gap in our knowledge of microbial diversity. Here, we present the domestication of such an organism: a previously uncultured, novel species from the rare

Indexed as

GenomicsBacteriological TechniquesGenome, BacterialINDEL MutationMicromonosporaceaePolymorphism, Single NucleotidePseudogenesDNA sequencingenvironmental microbiologyevolutionmolecular genetics

Identifiers

PMID34495705
PMCPMC8552891

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.