Evidence map›Paper›PMID 34493749›Full record

ArticleScientific reports2021

Targeting of Uropathogenic Escherichia coli papG gene using CRISPR-dot nanocomplex reduced virulence of UPEC.

Surbhi Gupta, Parveen Kumar, Bhawna Rathi, Vivek Verma, Rakesh Singh Dhanda, Pooja Devi, Manisha Yadav

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In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it.

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  11. Delivery of functional Cas:DNA nucleoprotein complexes into recipient bacteria through a type IV secretion system.Proceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Surbhi GuptaDr. B. R. Ambedkar Center for Biomedical Research, University of Delhi, New Delhi, India.
Parveen KumarDepartment of Urology, University of Alabama at Birmingham, Hugh Kaul Genetics Building, Birmingham, AL, USA.
Bhawna RathiDr. B. R. Ambedkar Center for Biomedical Research, University of Delhi, New Delhi, India.
Vivek VermaDr. B. R. Ambedkar Center for Biomedical Research, University of Delhi, New Delhi, India.
Rakesh Singh DhandaStem Cell Laboratory, SMiLE Incubator, Scheelevägen 2, Lund, Sweden.
Pooja DeviCSIR-Central Scientific Instruments Organisation, Sector-30C, Chandigarh, India.
Manisha YadavDr. B. R. Ambedkar Center for Biomedical Research, University of Delhi, New Delhi, India. manisha.dhanda@gmail.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Urinary tract infections (UTI) are the most common infectious diseases in the world. It is becoming increasingly tough to treat because of emergence of antibiotic resistance. So, there is an exigency to develop novel anti-virulence therapeutics to combat multi-drug resistance pathogenic strains. Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) discovery has revolutionized the gene editing technology for targeted approach. The greatest obstacle for CRISPR/Cas9 is cargo delivery systems and both viral and plasmid methods have disadvantages. Here, we report a highly efficient novel CRISPR based gene editing strategy, CRISPR-dots for targeting virulence factor Fimbrial Adhesion (papG gene), the bacterial adhesion molecule. Carbon quantum dots (CQD) were used as a delivery vehicle for Cas9 and gRNA into CFT073, a UPEC strain. CQDs were covalently conjugated to cas9 and papG-targeted guide RNA (gRNA) forming a nanocomplex CRISPR-dots (Cri-dots) as confirmed by DLS and transmission electron microscopy. Cri-dots-papG significantly targeted papG as demonstrated by decrease in the expression of papG.Further papG deficient UPEC had significantly reduced adherence ability and biofilm forming ability as demonstrated by fluorescence microscopy and scanning electron microscopy. Also, papG deficient UPEC had reduced virulence as shown by significantly increased survival of Caenorhabditis elegans (C. elegans) worms compared to UPEC. Our findings suggest that targeting of papG gene using Cri-dots nanocomplexes significantly reduced the pathogenicity of UPEC. Thus, Cri-dots nanocomplex offer a novel anti-bacterial strategy against multi-drug resistant UPEC.

Indexed as

CRISPR-Cas SystemsAdhesins, Escherichia coliAnimalsBacterial AdhesionBiofilmsCaenorhabditis elegansCarbonCRISPR-Associated Protein 9Drug Delivery SystemsEscherichia coli InfectionsEscherichia coli K12Fimbriae ProteinsGene EditingHeLa CellsHemagglutinationHumansAdhesins, Escherichia coliCarbonCRISPR-Associated Protein 9Fimbriae ProteinsMannosePapG protein, E coliPharmaceutical VehiclesRNA, Guide, CRISPR-Cas Systems

Identifiers

PMID34493749
PMCPMC8423837

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.