ArticleBMC genomics2021
The chloroplast genome of Amygdalus L. (Rosaceae) reveals the phylogenetic relationship and divergence time.
Article in BMC genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed, 37 citations in OpenAlex.
- Plastome architecture and maternal relationships of cultivated almond (Prunus dulcis) and its wild relatives.Planta · 2026Article
- Chloroplast Haplotype Analysis Reveals High Genetic Similarity Among Central AsianInternational journal of molecular sciences · 2026Article
- Chloroplast genome comparison, phylogeny, and molecular evolution of five endemic Potentilla (Rosaceae) species in Mongolia.Genetica · 2026Article
- Plastome evolution and phylogenomics of Glycine (Leguminosae: Papilionoideae).BMC plant biology · 2026Article
- Structural analysis of clingstone and freestone peach (Prunus persica L.) plastome genome: provides insight into phylogeny and time diversification.Journal, genetic engineering & biotechnology · 2026Article
- Comprehensive analysis of complete Chloroplast genome sequence of Cardiospermum halicacabum L. (Sapindaceae).Scientific reports · 2025Article
- Complete chloroplast genome data ofData in brief · 2025Article
- Comparative plastome analyses and evolutionary relationships ofFrontiers in plant science · 2025Article
- Plastome structure, phylogeny and evolution of plastid genes in Reevesia (Helicteroideae, Malvaceae).Journal of plant research · 2024Article
- Comparative and phylogenetic analysis of the complete chloroplast genomes of 10 Artemisia selengensis resources based on high-throughput sequencing.BMC genomics · 2024Article
- Sequence characteristics, genetic diversity and phylogenetic analysis of the Cucurbita ficifolia (Cucurbitaceae) chloroplasts genome.BMC genomics · 2024Article
- Chloroplast genome data of fiveData in brief · 2024Article
- The Genome of Vitis zhejiang-adstricta Strengthens the Protection and Utilization of the Endangered Ancient Grape Endemic to China.Plant & cell physiology · 2024Article
- Comparative chloroplast genomes ofFrontiers in plant science · 2024Article
- Sequencing and Phylogenetic Analysis of the Chloroplast Genome of Three Apricot Species.Genes · 2023Article
- Chloroplast genome characteristics and phylogeny of the sinodielsia clade (apiaceae: apioideae).BMC plant biology · 2023Article
- Comparative and phylogenetic analysis of the complete chloroplast genomes of six Polygonatum species (Asparagaceae).Scientific reports · 2023Article
- Phylogenomics and plastome evolution ofFrontiers in plant science · 2023Article
- Complete mitochondrial genome of the endangeredFrontiers in plant science · 2023Article
- Infrageneric Plastid Genomes ofGenes · 2022Article
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Authors and funding
8 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundLimited access to genetic information has greatly hindered our understanding of the molecular evolution, phylogeny, and differentiation time of subg. Amygdalus. This study reported complete chloroplast (cp) genome sequences of subg. Amygdalus, which further enriched the available valuable resources of complete cp genomes of higher plants and deepened our understanding of the divergence time and phylogenetic relationships of subg. Amygdalus.
resultsThe results showed that subg. Amygdalus species exhibited a tetrad structure with sizes ranging from 157,736 bp (P. kansuensis) to 158,971 bp (P. davidiana), a pair of inverted repeat regions (IRa/IRb) that ranged from 26,137-26,467 bp, a large single-copy region that ranged from 85,757-86,608 bp, and a small single-copy region that ranged from 19,020-19,133 bp. The average GC content of the complete cp genomes in the 12 species was 36.80%. We found that the structure of the subg. Amygdalus complete cp genomes was highly conserved, and the 12 subg. Amygdalus species had an rps19 pseudogene. There was not rearrangement of the complete cp genome in the 12 subg. Amygdalus species. All 12 subg. Amygdalus species clustered into one clade based on both Bayesian inference and maximum likelihood. The divergence time analyses based on the complete cp genome sequences showed that subg. Amygdalus species diverged approximately 15.65 Mya.
conclusionOur results provide data on the genomic structure of subg. Amygdalus and elucidates their phylogenetic relationships and divergence time.
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