Evidence map›Paper›PMID 34493199›Full record

ArticleBMC plant biology2021

Genome-wide analysis of OSCA gene family members in Vigna radiata and their involvement in the osmotic response.

Lili Yin, Meiling Zhang, Ruigang Wu, Xiaoliang Chen, Fei Liu, Baolong Xing

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
6.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  4. Physiological Adaptations ofPlants (Basel, Switzerland) · 2025
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  7. Molecular Mechanisms of Plant Defense against Abiotic Stress.International journal of molecular sciences · 2023
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  10. International journal of molecular sciences · 2022
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  11. Review
  12. Genome-Wide Identification, Evolution and Expressional Analysis ofInternational journal of molecular sciences · 2022
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  13. Article
  14. Article
  15. Review
  16. Article
  17. Genome-Wide Identification and Expression Profile ofInternational journal of molecular sciences · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Lili YinCollege of Life Science, Shanxi Datong University, Datong, 037009, People's Republic of China.
Meiling ZhangBeijing Academy of Forestry and Pomology Sciences, Beijing, 100093, People's Republic of China.
Ruigang WuSchool of Landscape and Ecological Engineering, Hebei University of Engineering, Handan, 056038, People's Republic of China.
Xiaoliang ChenSchool of Medicine, Shanxi Datong University, Datong, 037009, People's Republic of China.
Fei LiuHigh Latitude Crops Institute, Shanxi Agricultural University, Datong, 037008, People's Republic of China.
Baolong XingHigh Latitude Crops Institute, Shanxi Agricultural University, Datong, 037008, People's Republic of China. ghsxingbl@163.com.ORCID http://orcid.org/0000-0002-1360-5338
Shanxi Agricultural University · CNShanxi Datong University · CNBeijing Academy of Agricultural and Forestry Sciences · CNHebei University of Engineering · CN

Funding

Beijing Academy of Agriculture and Forestry Fund for Young Scholars QNJJ201925Doctoral Scientific Research Foundation of Shanxi Datong University 2018-B-16National Edible Bean Industry Technology System Special Project CARS-08-Z5Scientific and Technological Innovation Programs of Higher Education Institutions in Shanxi 2020L0494Scientific and Technological Innovation Programs of Higher Education Institutions in Shanxi 2020L0496Shanxi Applied Basic Research Project 201901D211427Shanxi Scholarship Council of China 2020-136
6 · The paper itself

Abstract

backgroundMung bean (Vigna radiata) is a warm-season legume crop and belongs to the papilionoid subfamily of the Fabaceae family. China is the leading producer of mung bean in the world. Mung bean has significant economic and health benefits and is a promising species with broad adaptation ability and high tolerance to environmental stresses. OSCA (hyperosmolality-gated calcium-permeable channel) gene family members play an important role in the modulation of hypertonic stress, such as drought and salinity. However, genome-wide analysis of the OSCA gene family has not been conducted in mung bean.

resultsWe identified a total of 13 OSCA genes in the mung bean genome and named them according to their homology with AtOSCAs. All the OSCAs were phylogenetically split into four clades. Phylogenetic relationship and synteny analyses showed that the VrOSCAs in mung bean and soybean shared a relatively conserved evolutionary history. In addition, three duplicated VrOSCA gene pairs were identified, and the duplicated VrOSCAs gene pairs mainly underwent purifying selection pressure during evolution. Protein domain, motif and transmembrane analyses indicated that most of the VrOSCAs shared similar structures with their homologs. The expression pattern showed that except for VrOSCA2.1, the other 12 VrOSCAs were upregulated under treatment with ABA, PEG and NaCl, among which VrOSCA1.4 showed the largest increased expression levels. The duplicated genes VrOSCA2.1/VrOSCA2.2 showed divergent expression, which might have resulted in functionalization during subsequent evolution. The expression profiles under ABA, PEG and NaCl stress revealed a functional divergence of VrOSCA genes, which agreed with the analysis of cis-acting regulatory elements in the promoter regions of VrOSCA genes.

conclusionsCollectively, the study provided a systematic analysis of the VrOSCA gene family in mung bean. Our results establish an important foundation for functional and evolutionary analysis of VrOSCAs and identify genes for further investigation of their ability to confer abiotic stress tolerance in mung bean.

Indexed as

Abscisic AcidArabidopsisGene DuplicationGene Expression Regulation, PlantGenome, PlantGenome-Wide Association StudyGlycine maxMultigene FamilyOryzaOsmoregulationOsmotic PressurePhylogenyPlant ProteinsPromoter Regions, GeneticSodium ChlorideStress, PhysiologicalAbscisic AcidPlant ProteinsSodium ChlorideAbiotic stressEvolutionary analysisExpression patternsMung bean (Vigna radiata)OSCA gene family

Identifiers

PMID34493199
PMCPMC8422765
OpenAlexW3196709186

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.