Evidence map›Paper›PMID 34491912›Full record

ArticleThe Journal of clinical investigation2021

Identification of direct transcriptional targets of NFATC2 that promote β cell proliferation.

Shane P Simonett, Sunyoung Shin, Jacob A Herring, Rhonda Bacher, Linsin A Smith, Chenyang Dong, Mary E Rabaglia, Donnie S Stapleton, Kathryn L Schueler, Jeea Choi and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  9. Dual role of neuroplastin in pancreatic β cells: Regulating insulin secretion and promoting islet inflammation.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. CaBiomedicines · 2023
    Review
  15. The metabolic nature of inflammatory bowel diseases.Nature reviews. Gastroenterology & hepatology · 2022
    Review
  16. Article
  17. Article
  18. [Metformin and lipopolysaccharide regulate transcription ofNan fang yi ke da xue xue bao = Journal of Southern Medical University · 2022
    Article
  19. Dynamic changes in β-cell [CaMolecular metabolism · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 9 institutions in 1 country.

Shane P SimonettBiochemistry Department, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Sunyoung ShinDepartment of Mathematical Sciences, University of Texas at Dallas, Richardson, Texas, USA.
Jacob A HerringNutrition, Dietetics and Food Science Department, Brigham Young University, Provo, Utah, USA.
Rhonda BacherDepartment of Biostatistics, University of Florida, Gainesville, Florida, USA.
Linsin A SmithDepartments of Pediatrics, Pathology, and Human Genetics, University of Chicago, Chicago, Illinois, USA.
Chenyang DongDepartment of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Mary E RabagliaBiochemistry Department, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Donnie S StapletonBiochemistry Department, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Kathryn L SchuelerBiochemistry Department, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Jeea ChoiDepartment of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Matthew N BernsteinMorgridge Institute for Research, Madison, Wisconsin, USA.
Daniel R TurkewitzDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, Tennessee, USA.
Carlos Perez-CervantesDepartments of Pediatrics, Pathology, and Human Genetics, University of Chicago, Chicago, Illinois, USA.
Jason SpaethDepartment of Pediatrics, Indiana University School of Medicine, Indianapolis, Indiana, USA.
Roland SteinDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, Tennessee, USA.
Jeffery S TessemNutrition, Dietetics and Food Science Department, Brigham Young University, Provo, Utah, USA.
Christina KendziorskiDepartment of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Sündüz KeleşDepartment of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Ivan P MoskowitzDepartments of Pediatrics, Pathology, and Human Genetics, University of Chicago, Chicago, Illinois, USA.
Mark P KellerBiochemistry Department, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Alan D AttieBiochemistry Department, University of Wisconsin-Madison, Madison, Wisconsin, USA.
University of Wisconsin System · USUniversity of Wisconsin–Madison · USUniversity of Chicago · USBrigham Young University · USVanderbilt University · USIndiana University School of MedicineMorgridge Institute for Research · USThe University of Texas at Dallas · USUniversity of Florida · US

Funding

The Human Islet Distribution Coordinating Center (UC4)UC4DK098085 · NIDDK · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI EVANS-MOLINA, CARMELLA, NILAND, JOYCE CAROL · 2012 to 2017
$25.6M
Integrated Islet Distribution Program (U24) - 2021U24DK098085 · NIDDK · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI Carmella Evans-Molina, Joyce Carol Niland · 2021 to 2026
$17.8M
PREDOCTORAL TRAINING IN GENETICS AND REGULATIONT32GM007197 · NIGMS · UNIVERSITY OF CHICAGO · PI ROTHMAN-DENES, LUCIA B. B · 1985 to 2020
$17.0M
MULTIDISCIPLINARY CARDIAC SCIENCEST32HL007381 · NHLBI · UNIVERSITY OF CHICAGO · PI JEANNE M DECARA, Yoav Gilad · 1985 to 2026
$12.5M
Genetic Control of Metabolic Flux in Response to DietRC2DK125961 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI ATTIE, ALAN D · 2020 to 2024
$8.1M
PDX-1,A TRANSCRIPTIONAL ACTIVATOR OF THE INSULIN GENER01DK050203 · NIDDK · VANDERBILT UNIVERSITY · PI BASS, JOSEPH, STEIN, ROLAND W · 1995 to 2020
$6.8M
Genetic Mapping of Networks Associated with Beta-cell D*R01DK066369 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI ATTIE, ALAN D · 2004 to 2014
$6.3M
Defining the Role of MafA in Islet Beta CellsR01DK090570 · NIDDK · VANDERBILT UNIVERSITY · PI PARENT, AUDREY, STEIN, ROLAND W · 2011 to 2025
$5.9M
The Genetics of Obesity and DiabetesR01DK058037 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI ATTIE, ALAN D · 2001 to 2013
$5.7M
The Diversity Outbred Diabetes ProjectR01DK101573 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI Alan D Attie · 2014 to 2026
$5.3M
Statistical Methods for the Analysis of ChlP-chip DataR01HG003747 · NHGRI · UNIVERSITY OF WISCONSIN-MADISON · PI KELES, SUNDUZ · 2007 to 2024
$4.8M
Statistical methods for spatial RNA sequencing experimentsR01GM102756 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI KENDZIORSKI, CHRISTINA · 2012 to 2024
$3.8M
NHGRI NIH HHS R01 HG003747NHGRI NIH HHS R21 HG011371NHLBI NIH HHS R01 HL126509NHLBI NIH HHS R01 HL147571NHLBI NIH HHS R01 HL148719NHLBI NIH HHS T32 HL007381NIDDK NIH HHS R01 DK050203NIDDK NIH HHS R01 DK058037NIDDK NIH HHS R01 DK066369NIDDK NIH HHS R01 DK090570NIDDK NIH HHS R01 DK101573NIDDK NIH HHS R01 DK102948NIDDK NIH HHS R15 DK124835NIDDK NIH HHS R56 DK050203NIDDK NIH HHS RC2 DK125961NIDDK NIH HHS U24 DK098085NIDDK NIH HHS UC4 DK098085NIGMS NIH HHS R01 GM102756NIGMS NIH HHS T32 GM007197
6 · The paper itself

Abstract

The transcription factor NFATC2 induces β cell proliferation in mouse and human islets. However, the genomic targets that mediate these effects have not been identified. We expressed active forms of Nfatc2 and Nfatc1 in human islets. By integrating changes in gene expression with genomic binding sites for NFATC2, we identified approximately 2200 transcriptional targets of NFATC2. Genes induced by NFATC2 were enriched for transcripts that regulate the cell cycle and for DNA motifs associated with the transcription factor FOXP. Islets from an endocrine-specific Foxp1, Foxp2, and Foxp4 triple-knockout mouse were less responsive to NFATC2-induced β cell proliferation, suggesting the FOXP family works to regulate β cell proliferation in concert with NFATC2. NFATC2 induced β cell proliferation in both mouse and human islets, whereas NFATC1 did so only in human islets. Exploiting this species difference, we identified approximately 250 direct transcriptional targets of NFAT in human islets. This gene set enriches for cell cycle-associated transcripts and includes Nr4a1. Deletion of Nr4a1 reduced the capacity of NFATC2 to induce β cell proliferation, suggesting that much of the effect of NFATC2 occurs through its induction of Nr4a1. Integration of noncoding RNA expression, chromatin accessibility, and NFATC2 binding sites enabled us to identify NFATC2-dependent enhancer loci that mediate β cell proliferation.

Indexed as

Cell ProliferationGene Expression RegulationResponse ElementsTranscription, GeneticAnimalsHumansInsulin-Secreting CellsMiceMice, KnockoutNFATC Transcription FactorsNFATC2 protein, humanNfatc2 protein, mouseNFATC Transcription FactorsBeta cellsCell BiologyCell cycleDiabetesEndocrinology

Identifiers

PMID34491912
PMCPMC8553569
OpenAlexW3196353619

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.