Evidence map›Paper›PMID 34491570›Full record

ArticleBrazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]2021

Retrotransposons and multilocus sequence analysis reveals diversity and genetic variability in endophytic fungi-associated with Serjania laruotteana Cambess.

Amanda da Silva Ribeiro, Julio Cesar Polonio, João Arthur Dos Santos Oliveira, Ana Paula Ferreira, Leonardo Hamamura Alves, Natieli Jenifer Mateus, Claudete Aparecida Mangolin, João Lúcio de Azevedo, João Alencar Pamphile

Abstract read
In one paragraph

Article in Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology], 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. How genomics can help unravel the evolution of endophytic fungi.World journal of microbiology & biotechnology · 2025
    Review
  6. The Genome ofInternational journal of molecular sciences · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Amanda da Silva RibeiroDepartment of Biotechnology, Genetics and Cell Biology, Universidade Estadual de Maringá, Avenida Colombo, 5790, Maringa, Paraná, 87020-900, Brazil.
Julio Cesar PolonioDepartment of Biotechnology, Genetics and Cell Biology, Universidade Estadual de Maringá, Avenida Colombo, 5790, Maringa, Paraná, 87020-900, Brazil. jcpolonio2@uem.br.ORCID http://orcid.org/0000-0001-5451-4320
João Arthur Dos Santos OliveiraDepartment of Biotechnology, Genetics and Cell Biology, Universidade Estadual de Maringá, Avenida Colombo, 5790, Maringa, Paraná, 87020-900, Brazil.
Ana Paula FerreiraDepartment of Biotechnology, Genetics and Cell Biology, Universidade Estadual de Maringá, Avenida Colombo, 5790, Maringa, Paraná, 87020-900, Brazil.
Leonardo Hamamura AlvesDepartment of Biotechnology, Genetics and Cell Biology, Universidade Estadual de Maringá, Avenida Colombo, 5790, Maringa, Paraná, 87020-900, Brazil.
Natieli Jenifer MateusDepartment of Biotechnology, Genetics and Cell Biology, Universidade Estadual de Maringá, Avenida Colombo, 5790, Maringa, Paraná, 87020-900, Brazil.
Claudete Aparecida MangolinDepartment of Biotechnology, Genetics and Cell Biology, Universidade Estadual de Maringá, Avenida Colombo, 5790, Maringa, Paraná, 87020-900, Brazil.
João Lúcio de AzevedoDepartment of Genetics, Escola Superior de Agricultura Luiz de Queiroz (ESALQ/USP), Piracicaba, São Paulo, 13418-900, Brazil.
João Alencar PamphileDepartment of Biotechnology, Genetics and Cell Biology, Universidade Estadual de Maringá, Avenida Colombo, 5790, Maringa, Paraná, 87020-900, Brazil.

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico 307603/2017-2Secretaria de Ciência, Tecnologia e Ensino Superior, Governo do Estado de Paraná (BR) SETI-UGF (TC n. 65/2018)
6 · The paper itself

Abstract

The composition of endophytic communities is dynamic and demonstrates host specificity; besides, they have great intra- and interspecific genetic variability. In this work, we isolated leaf endophytic fungi from Serjania laruotteana, identify them using multilocus analysis, and evaluate the genetic variability using IRAP (inter-retrotransposon amplified polymorphism) and REMAP (retrotransposon-microssatellite amplified polymorphism). A total of 261 fungi were isolated and 58 were identified. Multilocus phylogenetic analysis using the partial sequences from the ITS1-5.8S-ITS2 regions, elongation factor 1-alpha, β-tubulin, actin, glyceraldehyde-3-phosphate dehydrogenase, and calmodulin genes identify that most strains belonged to the Colletotrichum and Diaporthe genera, other isolated genera were Xylaria, Phyllosticta, Muyocopron, Fusarium, Nemania, Plectosphaerella, Corynespora, Bipolaris, and Curvularia. The IRAP and REMAP analyzes were performed with Colletotrichum and Diaporthe genera and showed 100% of polymorphism and high intra- and interspecific variability. This is the first report of the diversity of endophytic fungi from S. laruotteana. In addition, it demonstrated that the IRAP and REMAP can be used to distinguish morphologically similar lineages, revealing differences even strains of the same species.

Indexed as

BiodiversityFungiSapindaceaeMultilocus Sequence TypingPhylogenyRetroelementsRetroelementsDNA fingerprintingIRAPMicroorganismsPolymorphismREMAP

Identifiers

PMID34491570
PMCPMC8578539

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.