Evidence map›Paper›PMID 34490842›Full record

ArticleeLife2021

Structural variability and concerted motions of the T cell receptor - CD3 complex.

Prithvi R Pandey, Bartosz Różycki, Reinhard Lipowsky, Thomas R Weikl

Abstract readVideo-Audio Media
In one paragraph

Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. What's the Catch? The Significance of Catch Bonds in T Cell Activation.Journal of immunology (Baltimore, Md. : 1950) · 2023
    Review
  8. Targeting CXCL9/10/11-CXCR3 axis: an important component of tumor-promoting and antitumor immunity.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2023
    Review
  9. Review
  10. T cell and B cell antigen receptors share a conserved core transmembrane structure.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Prithvi R PandeyMax Planck Institute of Colloids and Interfaces, Department of Theory and Bio-Systems, Potsdam, Germany.
Bartosz RóżyckiInstitute of Physics, Polish Academy of Sciences, Warsaw, Poland.ORCID 0000-0001-5938-7308
Reinhard LipowskyMax Planck Institute of Colloids and Interfaces, Department of Theory and Bio-Systems, Potsdam, Germany.ORCID 0000-0001-8417-8567
Thomas R WeiklMax Planck Institute of Colloids and Interfaces, Department of Theory and Bio-Systems, Potsdam, Germany.ORCID 0000-0002-0911-5328

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We investigate the structural and orientational variability of the membrane-embedded T cell receptor (TCR) - CD3 complex in extensive atomistic molecular dynamics simulations based on the recent cryo-EM structure determined by Dong et al., 2019. We find that the TCR extracellular (EC) domain is highly variable in its orientation by attaining tilt angles relative to the membrane normal that range from 15° to 55°. The tilt angle of the TCR EC domain is both coupled to a rotation of the domain and to characteristic changes throughout the TCR - CD3 complex, in particular in the EC interactions of the Cβ FG loop of the TCR, as well as in the orientation of transmembrane helices. The concerted motions of the membrane-embedded TCR - CD3 complex revealed in our simulations provide atomistic insights on conformational changes of the complex in response to tilt-inducing forces on antigen-bound TCRs.

Indexed as

CD3 ComplexCell MembraneCryoelectron MicroscopyHumansMolecular Dynamics SimulationProtein BindingProtein Conformation, alpha-HelicalReceptor-CD3 Complex, Antigen, T-CellReceptors, Antigen, T-Cell, alpha-betaStructure-Activity RelationshipT-LymphocytesCD3 ComplexReceptor-CD3 Complex, Antigen, T-CellReceptors, Antigen, T-Cell, alpha-betaCD3humanimmunologyinflammationmolecular dynamicsstructural changesT cell receptor

Identifiers

PMID34490842
PMCPMC8504971

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.