Evidence map›Paper›PMID 34489876›Full record

ArticleFrontiers in microbiology2021

The Sputum Microbiome in Pulmonary Tuberculosis and Its Association With Disease Manifestations: A Cross-Sectional Study.

Monica R Ticlla, Jerry Hella, Hellen Hiza, Mohamed Sasamalo, Francis Mhimbira, Liliana K Rutaihwa, Sara Droz, Sarah Schaller, Klaus Reither, Markus Hilty and 5 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
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  3. Observational
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  10. More thanThorax · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 3 countries.

Monica R TicllaSwiss Tropical and Public Health Institute, Basel, Switzerland.
Jerry HellaUniversity of Basel, Basel, Switzerland.
Hellen HizaIfakara Health Institute, Dar es Salaam, Tanzania.
Mohamed SasamaloIfakara Health Institute, Dar es Salaam, Tanzania.
Francis MhimbiraIfakara Health Institute, Dar es Salaam, Tanzania.
Liliana K RutaihwaSwiss Tropical and Public Health Institute, Basel, Switzerland.
Sara DrozInstitute for Infectious Diseases, University of Bern, Bern, Switzerland.
Sarah SchallerInstitute for Infectious Diseases, University of Bern, Bern, Switzerland.
Klaus ReitherSwiss Tropical and Public Health Institute, Basel, Switzerland.
Markus HiltyInstitute for Infectious Diseases, University of Bern, Bern, Switzerland.
Inaki ComasTuberculosis Genomics Unit, Biomedicine Institute of Valencia, Valencia, Spain.
Christian BeiselDepartment of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland.
Christoph D SchmidSwiss Tropical and Public Health Institute, Basel, Switzerland.
Lukas FennerSwiss Tropical and Public Health Institute, Basel, Switzerland.
Sebastien GagneuxSwiss Tropical and Public Health Institute, Basel, Switzerland.
Ifakara Health Institute · TZUniversity of Basel · CHUniversity of Bern · CHSIB Swiss Institute of Bioinformatics · CHBiomechanics Institute of Valencia · ESETH Zurich · CHSwiss Tropical and Public Health Institute · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Each day, approximately 27,000 people become ill with tuberculosis (TB), and 4,000 die from this disease. Pulmonary TB is the main clinical form of TB, and affects the lungs with a considerably heterogeneous manifestation among patients. Immunomodulation by an interplay of host-, environment-, and pathogen-associated factors partially explains such heterogeneity. Microbial communities residing in the host's airways have immunomodulatory effects, but it is unclear if the inter-individual variability of these microbial communities is associated with the heterogeneity of pulmonary TB. Here, we investigated this possibility by characterizing the microbial composition in the sputum of 334 TB patients from Tanzania, and by assessing its association with three aspects of disease manifestations: sputum mycobacterial load, severe clinical findings, and chest x-ray (CXR) findings. Compositional data analysis of taxonomic profiles based on 16S-rRNA gene amplicon sequencing and on whole metagenome shotgun sequencing, and graph-based inference of microbial associations revealed that the airway microbiome of TB patients was shaped by inverse relationships between

Indexed as

airway microbiomeanaerobesBMIchest X-rayclinical phenotypeHIV-TB coinfectionsputumtuberculosis

Identifiers

PMID34489876
PMCPMC8417804
OpenAlexW3195812444

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.