Evidence map›Paper›PMID 34489599›Full record

ArticleLab animal2021

Annelid genomes: Enchytraeus crypticus, a soil model for the innate (and primed) immune system.

Mónica J B Amorim, Yannick Gansemans, Susana I L Gomes, Filip Van Nieuwerburgh, Janeck J Scott-Fordsmand

Abstract read
In one paragraph

Article in Lab animal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Acceleration of genome rearrangement in clitellate annelids.bioRxiv : the preprint server for biology · 2024
    Article
  3. Trophic Position of the White Worm (International journal of molecular sciences · 2024
    Article
  4. Article
  5. Turning fifty.Lab animal · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Mónica J B AmorimDepartment of Biology & CESAM, University of Aveiro, Aveiro, Portugal. mjamorim@ua.pt.ORCID http://orcid.org/0000-0001-8137-3295
Yannick GansemansDepartment of Pharmaceutics, Laboratory of Pharmaceutical Biotechnology, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0001-5018-044X
Susana I L GomesDepartment of Biology & CESAM, University of Aveiro, Aveiro, Portugal.
Filip Van NieuwerburghDepartment of Pharmaceutics, Laboratory of Pharmaceutical Biotechnology, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0001-8815-5485
Janeck J Scott-FordsmandDepartment of Biosciences, Aarhus University, Silkeborg, Denmark.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Enchytraeids (Annelida) are soil invertebrates with worldwide distribution that have served as ecotoxicology models for over 20 years. We present the first high-quality reference genome of Enchytraeus crypticus, assembled from a combination of Pacific Bioscience single-molecule real-time and Illumina sequencing platforms as a 525.2 Mbp genome (910 gapless scaffolds and 18,452 genes). We highlight isopenicillin, acquired by horizontal gene transfer and conferring antibiotic function. Significant gene family expansions associated with regeneration (long interspersed nuclear elements), the innate immune system (tripartite motif-containing protein) and response to stress (cytochrome P450) were identified. The ACE (Angiotensin-converting enzyme) - a homolog of ACE2, which is involved in the coronavirus SARS-CoV-2 cell entry - is also present in E. crypticus. There is an obvious potential of using E. crypticus as a model to study interactions between regeneration, the innate immune system and aging-dependent decline.

Indexed as

COVID-19OligochaetaAnimalsHumansImmune SystemSARS-CoV-2SoilSoil

Identifiers

PMID34489599
PMCPMC8460440

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.