Evidence map›Paper›PMID 34488889›Full record

ArticleJournal of cheminformatics2021

Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop.

Fidele Ntie-Kang, Kiran K Telukunta, Serge A T Fobofou, Victor Chukwudi Osamor, Samuel A Egieyeh, Marilia Valli, Yannick Djoumbou-Feunang, Maria Sorokina, Conrad Stork, Neann Mathai and 25 more

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Article in Journal of cheminformatics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Microbial metabolites: cause or consequence in gastrointestinal disease?American journal of physiology. Gastrointestinal and liver physiology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors.

Fidele Ntie-KangDepartment of Chemistry, University of Buea, P. O. Box 63, Buea, Cameroon. fidele.ntie-kang@ubuea.cm.ORCID http://orcid.org/0000-0003-0795-394X
Kiran K TelukuntaTarunavadaanenasaha Muktbharatonnayana Samstha Foundation, Hyderabad, India.ORCID http://orcid.org/0000-0002-3219-9240
Serge A T FobofouInstitute of Pharmaceutical Biology, Technische Universität Braunschweig, Mendelssohnstrasse 1, 38106, Braunschweig, Germany.ORCID http://orcid.org/0000-0002-2095-2012
Victor Chukwudi OsamorDepartment of Computer and Information Sciences, Colege of Science and Technology, Covenant University, Km. 10 Idiroko Rd, Ogun, Ota, Nigeria.ORCID http://orcid.org/0000-0003-1868-0967
Samuel A EgieyehSchool of Pharmacy, University of the Western Cape, Cape Town, 7535, South Africa.ORCID http://orcid.org/0000-0002-7462-6669
Marilia ValliNuclei of Bioassays, Biosynthesis and Ecophysiology of Natural Products (NuBBE), Department of Organic Chemistry, Institute of Chemistry, Sao Paulo State University-UNESP, Araraquara, Brazil.ORCID http://orcid.org/0000-0003-1106-183X
Yannick Djoumbou-FeunangCorteva Agriscience, Indianapolis, IN, USA.ORCID http://orcid.org/0000-0001-7850-184X
Maria SorokinaInstitute for Inorganic and Analytical Chemistry, Friedrich Schiller University, Jena, Germany.ORCID http://orcid.org/0000-0001-9359-7149
Conrad StorkCenter for Bioinformatics, Universität Hamburg, 20146, Hamburg, Germany.ORCID http://orcid.org/0000-0002-5499-742X
Neann MathaiDepartment of Chemistry and Computational Biology Unit (CBU), University of Bergen, 5020, Bergen, Norway.ORCID http://orcid.org/0000-0002-5763-6304
Paul ZierepPharmaceutical Bioinformatics, Albert-Ludwigs-University, Freiburg, Germany.ORCID http://orcid.org/0000-0003-2982-388X
Ana L Chávez-HernándezDIFACQUIM Research Group, Department of Pharmacy, School of Chemistry, Universidad Nacional Autónoma de México, Mexico City, Mexico.
Miquel Duran-FrigolaErsilia Open Source Initiative, Cambridge, UK.ORCID http://orcid.org/0000-0002-9906-6936
Smith B BabiakaDepartment of Chemistry, University of Buea, P. O. Box 63, Buea, Cameroon.ORCID http://orcid.org/0000-0002-4476-5860
Romuald Tematio FouedjouDepartment of Chemistry, University of Dschang, Dschang, Cameroon.ORCID http://orcid.org/0000-0002-6346-086X
Donatus B EniDepartment of Chemistry, University of Buea, P. O. Box 63, Buea, Cameroon.ORCID http://orcid.org/0000-0002-4148-6372
Simeon AkameDepartment of Immunology, School of Health Sciences, Catholic University of Central Africa, BP 7871, Yaoundé, Cameroon.ORCID http://orcid.org/0000-0002-3400-8874
Augustine B Arreyetta-BawakDepartment of Biochemistry and Molecular Biology, University of Buea, P. O. Box 63, Buea, Cameroon.ORCID http://orcid.org/0000-0002-7598-8389
Oyere T EbobDepartment of Chemistry, University of Buea, P. O. Box 63, Buea, Cameroon.ORCID http://orcid.org/0000-0002-2373-1354
Jonathan A MetugeDepartment of Biochemistry and Molecular Biology, University of Buea, P. O. Box 63, Buea, Cameroon.
Boris D BekonoDepartment of Physics, Ecole Normale Supérieure, University of Yaoundé I, BP. 47, Yaoundé, Cameroon.ORCID http://orcid.org/0000-0003-1077-4176
Mustafa A IsaBioinformatics and Computational Biology Lab, Department of Microbiology, Faculty of Sciences, University of Maiduguri, P.M.B. 1069, Maiduguri, Borno State, Nigeria.ORCID http://orcid.org/0000-0003-4100-9506
Raphael OnukuDepartment of Pharmaceutical and Medicinal Chemistry, Faculty of Pharmaceutical Sciences, University of Nigeria Nsukka, Nsukka, Nigeria.ORCID http://orcid.org/0000-0003-2564-2109
Daniel M ShadrackDepartment of Chemistry, St. John's University of Tanzania, P. O. Box 47, Dodoma, Tanzania.ORCID http://orcid.org/0000-0003-4372-7421
Thommas M MusyokaResearch Unit in Bioinformatics (RUBi), Department of Biochemistry and Microbiology, Rhodes University, Makhanda, 6140, South Africa.ORCID http://orcid.org/0000-0001-8906-9482
Vaishali M PatilComputer Aided Drug Design Lab, KIET Group of Institutions, Delhi-NCR, Ghaziabad, 201206, India.ORCID http://orcid.org/0000-0002-5352-7872
Justin J J van der HooftBioinformatics Group, Wageningen University, Wageningen, The Netherlands.ORCID http://orcid.org/0000-0002-9340-5511
Vanderlan da Silva BolzaniNuclei of Bioassays, Biosynthesis and Ecophysiology of Natural Products (NuBBE), Department of Organic Chemistry, Institute of Chemistry, Sao Paulo State University-UNESP, Araraquara, Brazil.ORCID http://orcid.org/0000-0003-0615-8776
José L Medina-FrancoDIFACQUIM Research Group, Department of Pharmacy, School of Chemistry, Universidad Nacional Autónoma de México, Mexico City, Mexico.ORCID http://orcid.org/0000-0003-4940-1107
Johannes KirchmairDepartment of Pharmaceutical Sciences, Division of Pharmaceutical Chemistry, University of Vienna, 1090, Vienna, Austria.ORCID http://orcid.org/0000-0003-2667-5877
Tilmann WeberThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kgs. Lyngby, Denmark.ORCID http://orcid.org/0000-0002-8260-5120
Özlem Tastan BishopResearch Unit in Bioinformatics (RUBi), Department of Biochemistry and Microbiology, Rhodes University, Makhanda, 6140, South Africa.ORCID http://orcid.org/0000-0001-6861-7849
Marnix H MedemaBioinformatics Group, Wageningen University, Wageningen, The Netherlands.ORCID http://orcid.org/0000-0002-2191-2821
Ludger A WessjohannDepartment of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry (IPB), Weinberg 3, 06120, Halle (Saale), Germany.ORCID http://orcid.org/0000-0003-2060-8235
Jutta Ludwig-MüllerInstitute of Botany, Technische Universität Dresden, Zellescher Weg 20b, 01062, Dresden, Germany. jutta.ludwig-mueller@tu-dresden.de.ORCID http://orcid.org/0000-0002-9403-5153

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report the major conclusions of the online open-access workshop "Computational Applications in Secondary Metabolite Discovery (CAiSMD)" that took place from 08 to 10 March 2021. Invited speakers from academia and industry and about 200 registered participants from five continents (Africa, Asia, Europe, South America, and North America) took part in the workshop. The workshop highlighted the potential applications of computational methodologies in the search for secondary metabolites (SMs) or natural products (NPs) as potential drugs and drug leads. During 3 days, the participants of this online workshop received an overview of modern computer-based approaches for exploring NP discovery in the "omics" age. The invited experts gave keynote lectures, trained participants in hands-on sessions, and held round table discussions. This was followed by oral presentations with much interaction between the speakers and the audience. Selected applicants (early-career scientists) were offered the opportunity to give oral presentations (15 min) and present posters in the form of flash presentations (5 min) upon submission of an abstract. The final program available on the workshop website ( https://caismd.indiayouth.info/ ) comprised of 4 keynote lectures (KLs), 12 oral presentations (OPs), 2 round table discussions (RTDs), and 5 hands-on sessions (HSs). This meeting report also references internet resources for computational biology in the area of secondary metabolites that are of use outside of the workshop areas and will constitute a long-term valuable source for the community. The workshop concluded with an online survey form to be completed by speakers and participants for the goal of improving any subsequent editions.

Indexed as

BioinformaticsChemoinformaticsMetabolitesOnline workshopPredictionsWeb tools

Identifiers

PMID34488889
PMCPMC8419829

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.