Evidence map›Paper›PMID 34487760›Full record

ArticleThe Journal of biological chemistry2021

Topological analyses of the L-lysine exporter LysO reveal a critical role for a conserved pair of intramembrane solvent-exposed acidic residues.

Swati Dubey, Puja Majumder, Aravind Penmatsa, Abhijit A Sardesai

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In one paragraph

Article in The Journal of biological chemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Swati DubeyLaboratory of Bacterial Genetics, Centre for DNA Fingerprinting and Diagnostics, Hyderabad, India; Graduate Studies, Manipal Academy of Higher Education, Manipal, India.
Puja MajumderMolecular Biophysics Unit, Indian Institute of Science, Bangalore, India.
Aravind PenmatsaMolecular Biophysics Unit, Indian Institute of Science, Bangalore, India.
Abhijit A SardesaiLaboratory of Bacterial Genetics, Centre for DNA Fingerprinting and Diagnostics, Hyderabad, India. Electronic address: abhijit@cdfd.org.in.
Indian Institute of Science Bangalore · INCentre for DNA Fingerprinting and Diagnostics · INManipal Academy of Higher Education · IN

Funding

Wellcome Trust
6 · The paper itself

Abstract

LysO, a prototypical member of the LysO family, mediates export of L-lysine (Lys) and resistance to the toxic Lys antimetabolite, L-thialysine (Thl) in Escherichia coli. Here, we have addressed unknown aspects of LysO function pertaining to its membrane topology and the mechanism by which it mediates Lys/Thl export. Using substituted cysteine (Cys) accessibility, here we delineated the membrane topology of LysO. Our studies support a model in which both the N- and C-termini of LysO are present at the periplasmic face of the membrane with a transmembrane (TM) domain comprising eight TM segments (TMSs) between them. In addition, a feature of intramembrane solvent exposure in LysO is inferred with the identification of membrane-located solvent-exposed Cys residues. Isosteric substitutions of a pair of conserved acidic residues, one E233, located in the solvent-exposed TMS7 and the other D261, in a solvent-exposed intramembrane segment located between TMS7 and TMS8, abolished LysO function in vivo. Thl, but not Lys, elicited proton release in inside-out membrane vesicles, a process requiring the presence of both E233 and D261. We postulate that Thl may be exported in antiport with H

Indexed as

Amino Acid Transport Systems, BasicBiological Transport, ActiveCell MembraneEscherichia coli K12Escherichia coli ProteinsProtein DomainsStructure-Activity RelationshipAmino Acid Transport Systems, BasicEscherichia coli ProteinsYbjE protein, E coliamino acid transportbacterial metabolismEscherichia coli (E. coli)lysine exportmembrane proteinmembrane transportproton-coupled antiport

Identifiers

PMID34487760
PMCPMC8498466
OpenAlexW3197536638

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.