Evidence map›Paper›PMID 34486248›Full record

ArticleAdvanced science (Weinheim, Baden-Wurttemberg, Germany)2021

NOCICEPTRA: Gene and microRNA Signatures and Their Trajectories Characterizing Human iPSC-Derived Nociceptor Maturation.

Maximilian Zeidler, Kai K Kummer, Clemens L Schöpf, Theodora Kalpachidou, Georg Kern, M Zameel Cader, Michaela Kress

Open access · goldAbstract read
In one paragraph

Article in Advanced science (Weinheim, Baden-Wurttemberg, Germany), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. The pain target NaPflugers Archiv : European journal of physiology · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Review
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  11. Nociception, Transcriptomics ET CETERA: NOCICEPTRA.Pflugers Archiv : European journal of physiology · 2022
    Article
  12. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Maximilian ZeidlerInstitute of Physiology, Medical University of Innsbruck, Innsbruck, 6020, Austria.
Kai K KummerInstitute of Physiology, Medical University of Innsbruck, Innsbruck, 6020, Austria.ORCID 0000-0002-5854-6503
Clemens L SchöpfInstitute of Physiology, Medical University of Innsbruck, Innsbruck, 6020, Austria.
Theodora KalpachidouInstitute of Physiology, Medical University of Innsbruck, Innsbruck, 6020, Austria.ORCID 0000-0002-7924-7772
Georg KernInstitute of Physiology, Medical University of Innsbruck, Innsbruck, 6020, Austria.
M Zameel CaderWeatherall Institute of Molecular Medicine, University of Oxford, Oxford, OX3 9DS, UK.
Michaela KressInstitute of Physiology, Medical University of Innsbruck, Innsbruck, 6020, Austria.ORCID 0000-0002-8921-7470
Innsbruck Medical University · ATUniversity of Oxford · GB

Funding

Austrian Science Fund B16-06 to MKAustrian Science Fund P30809 to KKEuropean CommissionSeventh Framework Programme: "ncRNAPain" GA 602133
6 · The paper itself

Abstract

Nociceptors are primary afferent neurons serving the reception of acute pain but also the transit into maladaptive pain disorders. Since native human nociceptors are hardly available for mechanistic functional research, and rodent models do not necessarily mirror human pathologies in all aspects, human induced pluripotent stem cell-derived nociceptors (iDN) offer superior advantages as a human model system. Unbiased mRNA::microRNA co-sequencing, immunofluorescence staining, and qPCR validations, reveal expression trajectories as well as miRNA target spaces throughout the transition of pluripotent cells into iDNs. mRNA and miRNA candidates emerge as regulatory hubs for neurite outgrowth, synapse development, and ion channel expression. The exploratory data analysis tool NOCICEPTRA is provided as a containerized platform to retrieve experimentally determined expression trajectories, and to query custom gene sets for pathway and disease enrichments. Querying NOCICEPTRA for marker genes of cortical neurogenesis reveals distinct similarities and differences for cortical and peripheral neurons. The platform provides a public domain neuroresource to exploit the entire data sets and explore miRNA and mRNA as hubs regulating human nociceptor differentiation and function.

Indexed as

User-Computer InterfaceCell DifferentiationCell LineGene Regulatory NetworksHumansInduced Pluripotent Stem CellsMicroRNAsNociceptorsRNA, MessengerTranscriptomeMicroRNAsRNA, Messengerdevelopmentdifferentiationhumaninduced pluripotent stem cellspainRNA-seq resourcetemporal transcriptome analysis

Identifiers

PMID34486248
PMCPMC8564443
OpenAlexW3198611391

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.