Evidence map›Paper›PMID 34486076›Full record

ArticlePlant cell reports2021

RIN4 homologs from important crop species differentially regulate the Arabidopsis NB-LRR immune receptor, RPS2.

Maheen Alam, Jibran Tahir, Anam Siddiqui, Mazin Magzoub, Syed Shahzad-Ul-Hussan, David Mackey, A J Afzal

Abstract read
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In one paragraph

Article in Plant cell reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.5field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
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  6. The Upregulated Expression of the CitrusInternational journal of molecular sciences · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 5 countries.

Maheen AlamDepartment of Biology, Lahore University of Management Sciences, Sector U, DHA, Lahore, Pakistan.
Jibran TahirThe New Zealand Institute for Plant and Food Research Limited, Private Bag 92-169, Auckland, 1025, New Zealand.
Anam SiddiquiDepartment of Plant Sciences, Rothamsted Research, West Common, Harpenden, AL52JQ, UK.
Mazin MagzoubBiology Program, New York University Abu Dhabi, Abu Dhabi, UAE.
Syed Shahzad-Ul-HussanDepartment of Biology, Lahore University of Management Sciences, Sector U, DHA, Lahore, Pakistan.
David MackeyDepartment of Horticulture and Crop Science, The Ohio State University, Columbus, OH, 43210, USA.
A J AfzalBiology Program, New York University Abu Dhabi, Abu Dhabi, UAE. aja11@nyu.edu.ORCID http://orcid.org/0000-0003-1003-950X
Lahore University of Management Sciences · PKNew York University Abu Dhabi · AEPlant & Food Research · NZRothamsted Research · GBThe Ohio State University · US

Funding

Elucidating RIN4_Mediated Immune Signaling Cascades in ArabidopsisR01GM092772 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI COAKER, GITTA LAUREL · 2010 to 2018
$2.8M
NIH HHS R01GM092772
6 · The paper itself

Abstract

key messageRIN4 homologs from important crop species differ in their ability to prevent ectopic activity of the nucleotide binding-leucine rich repeat resistance protein, RPS2. Pathogens deploy virulence effectors to perturb host processes. Plants utilize intracellular resistance (R) proteins to recognize pathogen effectors either by direct interaction or indirectly via effector-mediated perturbations of host components. RPM1-INTERACTING PROTEIN4 (RIN4) is a plant immune regulator that mediates the indirect activation of multiple, independently evolved R-proteins by multiple, unrelated effector proteins. One of these, RPS2 (RESISTANT TO P. SYRINGAE2), is activated upon cleavage of Arabidopsis (At)RIN4 by the Pseudomonas syringae effector AvrRpt2. To gain insight into the AvrRpt2-RIN4-RPS2 defense-activation module, we compared the function of AtRIN4 with RIN4 homologs present in a diverse range of plant species. We selected seven homologs containing conserved features of AtRIN4, including two NOI (Nitrate induced) domains, each containing a predicted cleavage site for AvrRpt2, and a C-terminal palmitoylation site predicted to mediate membrane tethering of the proteins. Palmitoylation-mediated tethering of AtRIN4 to the plasma membrane and cleavage by AvrRpt2 are required for suppression and activation of RPS2, respectively. While all seven homologs are localized at the plasma membrane, only four suppress RPS2 when transiently expressed in Nicotiana benthamiana. All seven homologs are cleaved by AvrRpt2 and, for those homologs that are able to suppress RPS2, cleavage relieves suppression of RPS2. Further, we demonstrate that the membrane-tethered, C-terminal AvrRpt2-generated cleavage fragment is sufficient for the suppression of RPS2. Lastly, we show that the membrane localization of RPS2 is unaffected by its suppression or activation status.

Indexed as

Arabidopsis ProteinsBacterial ProteinsCell MembraneCrops, AgriculturalIntracellular Signaling Peptides and ProteinsLipoylationNicotianaPlant ImmunityPlant ProteinsPlants, Genetically ModifiedPseudomonas syringaeSequence Homology, Amino AcidArabidopsis ProteinsBacterial ProteinsIntracellular Signaling Peptides and ProteinsPlant ProteinsRIN4 protein, ArabidopsisAvrRpt2Nicotiana benthamianaPseudomonas syringaeRIN4 homologsR-proteinRPS2

Identifiers

PMID34486076
OpenAlexW3198491167

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.