Evidence map›Paper›PMID 34481324›Full record

ArticleDiagnostic microbiology and infectious disease2021

Comparison of diagnostic performance of five molecular assays for detection of SARS-CoV-2.

Neena Kanwar, Dithi Banerjee, Anjana Sasidharan, Ayah Abdulhamid, Marissa Larson, Brian Lee, Rangaraj Selvarangan, Rachael M Liesman

Open access · greenAbstract readComparative Study
In one paragraph

Article in Diagnostic microbiology and infectious disease, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 13 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Role of Hologic® Panther AptimaTM SARS-CoV-2 assay in the detection of SARS-CoV-2: screening or diagnostic technique?Revista espanola de quimioterapia : publicacion oficial de la Sociedad Espanola de Quimioterapia · 2023
    Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Clinical evaluation of the GSD NovaPrime® SARS-CoV-2 RTq-PCR assay.Diagnostic microbiology and infectious disease · 2022
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Neena KanwarDepartment of Pathology and Laboratory Medicine, Children's Mercy, Kansas City, MO, USA; School of Medicine, University of Missouri- Kansas City, MO, USA.
Dithi BanerjeeDepartment of Pathology and Laboratory Medicine, Children's Mercy, Kansas City, MO, USA; School of Medicine, University of Missouri- Kansas City, MO, USA.
Anjana SasidharanDepartment of Pathology and Laboratory Medicine, Children's Mercy, Kansas City, MO, USA.
Ayah AbdulhamidDepartment of Pathology and Laboratory Medicine, Children's Mercy, Kansas City, MO, USA.
Marissa LarsonDepartment of Pathology and Laboratory Medicine, University of Kansas Health System, Kansas City, KS, USA.
Brian LeeSchool of Medicine, University of Missouri- Kansas City, MO, USA; Division of Health Services and Outcomes Research, Children's Mercy, Kansas City, MO, USA.
Rangaraj SelvaranganDepartment of Pathology and Laboratory Medicine, Children's Mercy, Kansas City, MO, USA; School of Medicine, University of Missouri- Kansas City, MO, USA; Department of Pathology and Laboratory Medicine, University of Kansas Health System, Kansas City, KS, USA. Electronic address: rselvarangan@cmh.edu.
Rachael M LiesmanDepartment of Pathology and Laboratory Medicine, University of Kansas Health System, Kansas City, KS, USA. Electronic address: rliesman@kumc.edu.
Children's Mercy Hospital · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We compared the performance of the Abbott Real Time SARS-CoV-2 assay (Abbott assay), Aptima™ SARS-CoV-2 assay (Aptima assay), BGI Real-Time SARS-CoV-2 assay (BGI assay), Lyra® SARS-CoV-2 assay (Lyra assay), and DiaSorin Simplexa™ COVID assay for SARS-CoV-2 detection. Residual nasopharyngeal samples (n = 201) submitted for routine SARS-CoV-2 testing by Simplexa assay during June-July 2020 and January 2021 were salvaged. Aliquots were tested on other assays and compared against the CDC 2019-nCoV Real-Time RT-PCR assay. Viral load in positive samples was determined by droplet digital PCR. Among 201 samples, 99 were positive and 102 were negative by the CDC assay. The Aptima and Abbott assays exhibited the highest positive percent agreement (PPA) at 98.9% while the BGI assay demonstrated the lowest PPA of 89.9% with 10 missed detections. Negative percent agreement for all 5 platforms was comparable, ranging from 96.1% to 100%. The performance of all five assays was comparable.

Indexed as

AdolescentAdultAgedAged, 80 and overCOVID-19COVID-19 TestingFemaleHumansMaleMiddle AgedMolecular Diagnostic TechniquesNasopharynxProspective StudiesSARS-CoV-2Sensitivity and SpecificityViral LoadCOVID-19Molecular assay comparisonSARS-CoV-2 detection

Identifiers

PMID34481324
PMCPMC8343369
OpenAlexW3190598731

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.