Evidence map›Paper›PMID 34480693›Full record

ArticleScience China. Life sciences2022

Development of MEMS directed evolution strategy for multiplied throughput and convergent evolution of cytochrome P450 enzymes.

Li Ma, Fengwei Li, Xingwang Zhang, Hui Chen, Qian Huang, Jing Su, Xiaohui Liu, Tianjian Sun, Bo Fang, Kun Liu and 5 more

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In one paragraph

Article in Science China. Life sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 1 country.

Li MaState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.
Fengwei LiState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.
Xingwang ZhangState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.
Hui ChenShandong Provincial Key Laboratory of Synthetic Biology, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China.
Qian HuangCollege of Life Sciences, Yantai University, Yantai, 264005, China.
Jing SuState Key Laboratory of Biobased Material and Green Papermaking, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, China.
Xiaohui LiuState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.
Tianjian SunState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.
Bo FangState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.
Kun LiuState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.
Dandan TangState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.
Dalei WuState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.
Wei ZhangState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.
Lei DuState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China.
Shengying LiState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, China. lishengying@sdu.edu.cn.
Shandong University · CNState Key Laboratory of Microbial TechnologyQilu University of Technology · CNQingdao Institute of Bioenergy and Bioprocess Technology · CNQingdao National Laboratory for Marine Science and Technology · CNYantai University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Directed evolution (DE) inspired by natural evolution (NE) has been achieving tremendous successes in protein/enzyme engineering. However, the conventional "one-protein-for-one-task" DE cannot match the "multi-proteins-for-multi-tasks" NE in terms of screening throughput and efficiency, thus often failing to meet the fast-growing demands for biocatalysts with desired properties. In this study, we design a novel "multi-enzymes-for-multi-substrates" (MEMS) DE model and establish the proof-of-concept by running a NE-mimicking and higher-throughput screening on the basis of "two-P450s-against-seven-substrates" (2P×7S) in one pot. With the multiplied throughput and improved hit rate, we witness a series of convergent evolution events of the two archetypal cytochrome P450 enzymes (P450 BM3 and P450cam) in laboratory. It is anticipated that the new strategy of MEMS DE will find broader application for a larger repertoire of enzymes in the future. Furthermore, structural and substrate docking analysis of the two functionally convergent P450 variants provide important insights into how distinct P450 active-sites can reach a common catalytic goal.

Indexed as

Catalytic DomainCytochrome P-450 Enzyme SystemHigh-Throughput Screening AssaysSubstrate SpecificityCytochrome P-450 Enzyme Systemambroxide 3β-hydroxylaseconvergent evolutioncytochrome P450 enzymeshigh-throughput screeningMEMS directed evolution

Identifiers

PMID34480693
OpenAlexW3197445665

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.