Evidence map›Paper›PMID 34480605›Full record

ArticlePlant cell reports2021

Cyclic nucleotide gated channel genes (CNGCs) in Rosaceae: genome-wide annotation, evolution and the roles on Valsa canker resistance.

Xia Mao, Chao Wang, Qianqian Lv, Yuzhen Tian, Dongdong Wang, Baihong Chen, Juan Mao, Wenfang Li, Mingyu Chu, Cunwu Zuo

Abstract read
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In one paragraph

Article in Plant cell reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
10.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 36 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Xia MaoCollege of Horticulture, Gansu Agricultural University, Lanzhou, 730070, China.
Chao WangCollege of Horticulture, Gansu Agricultural University, Lanzhou, 730070, China.
Qianqian LvCollege of Horticulture, Gansu Agricultural University, Lanzhou, 730070, China.
Yuzhen TianCollege of Horticulture, Gansu Agricultural University, Lanzhou, 730070, China.
Dongdong WangCollege of Horticulture, Gansu Agricultural University, Lanzhou, 730070, China.
Baihong ChenCollege of Horticulture, Gansu Agricultural University, Lanzhou, 730070, China.
Juan MaoCollege of Horticulture, Gansu Agricultural University, Lanzhou, 730070, China.
Wenfang LiCollege of Horticulture, Gansu Agricultural University, Lanzhou, 730070, China.
Mingyu ChuCollege of Horticulture, Gansu Agricultural University, Lanzhou, 730070, China.
Cunwu ZuoCollege of Horticulture, Gansu Agricultural University, Lanzhou, 730070, China. zuocw@gsau.edu.cn.ORCID http://orcid.org/0000-0003-2989-0513
Gansu Agricultural University · CN

Funding

the National Natural Science Foundation of China 31860545
6 · The paper itself

Abstract

key messageIn Rosaceae, tandem duplication caused the drastic expansion of CNGC gene family Group I. The members MdCN11 and MdCN19 negatively regulate Valsa canker resistance. Apple (Malus domestica) and pear (Pyrus bretschneideri and P. communis) are important fruit crops in Rosaceae family but are suffering from threats of Valsa canker. Cyclic nucleotide-gated ion channels (CNGCs) take crucial roles in plant immune responses. In the present study, a total of 355 CNGCs was identified from 8 Rosaceae plants. Based on phylogenetic analysis, 540 CNGCs from 18 plants (8 in Rosaceae and 10 others) could be divided into four groups. Group I was greatly expanded in Rosaceae resulted from tandem duplications. A large number of cis-acting regulatory elements (cis-elements) responsive to signals from multiple stresses and hormones were identified in the promoter regions of CNGCs in Malus spp. and Pyrus spp. Expressions of most Group I members were obviously up-regulated in Valsa canker susceptible varieties but not in the resistant ones. Furthermore, overexpression of the MdCN11 and MdCN19 in both apple fruits and 'Duli' (P. betulifolia) suspension cells compromised Valsa canker resistance. Overexpression of MdCN11 induced expression of hypersensitive response (HR)-related genes. In conclusion, tandem duplication resulted in a drastic expansion of CNGC Group I members in Rosaceae. Among these, MdCN11 and MdCN19 negatively regulate the Valsa canker resistance via inducting HR.

Indexed as

AscomycotaCyclic Nucleotide-Gated Cation ChannelsDisease ResistanceEvolution, MolecularGene DuplicationGene Expression Regulation, PlantGenome, PlantMalusPhylogenyPlant DiseasesPlant ProteinsPlants, Genetically ModifiedProtein DomainsPyrusRegulatory Sequences, Nucleic AcidRosaceaeCyclic Nucleotide-Gated Cation ChannelsPlant ProteinsCNGCsHypersensitive responsePhylogenetic characteristicsTandem duplicationValsa canker

Identifiers

PMID34480605
OpenAlexW3197824844

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.