Evidence map›Paper›PMID 34479413›Full record

ArticleMicrobiology spectrum2021

Characterization of a Novel Hepatitis C Subtype, 6xj, and Its Consequences for Direct-Acting Antiviral Treatment in Yunnan, China.

Yuanyuan Jia, Wei Yue, Qinghua Gao, Rui Tao, Yaxiang Zhang, Xiaoyang Fu, Yang Liu, Li Liu, Yue Feng, Xueshan Xia

Abstract read
In one paragraph

Article in Microbiology spectrum, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yuanyuan Jia *Faculty of Life Science and Technology, Kunming University of Science and Technologygrid.218292.2, Kunming, China.
Wei Yue *Department of Infectious Diseases and Liver Diseases, The First People's Hospital of Yunnan Province, Kunming, China.
Qinghua GaoFaculty of Life Science and Technology, Kunming University of Science and Technologygrid.218292.2, Kunming, China.
Rui TaoDepartment of Infectious Diseases and Liver Diseases, The First People's Hospital of Yunnan Province, Kunming, China.
Yaxiang ZhangFaculty of Life Science and Technology, Kunming University of Science and Technologygrid.218292.2, Kunming, China.
Xiaoyang FuFaculty of Life Science and Technology, Kunming University of Science and Technologygrid.218292.2, Kunming, China.
Yang LiuFaculty of Life Science and Technology, Kunming University of Science and Technologygrid.218292.2, Kunming, China.
Li LiuFaculty of Life Science and Technology, Kunming University of Science and Technologygrid.218292.2, Kunming, China.
Yue FengFaculty of Life Science and Technology, Kunming University of Science and Technologygrid.218292.2, Kunming, China.ORCID 0000-0002-2718-0836
Xueshan XiaFaculty of Life Science and Technology, Kunming University of Science and Technologygrid.218292.2, Kunming, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hepatitis C virus (HCV) has a high rate of genetic variability, with eight genotypes and 91 subtypes. The genetic diversity of HCV genotype 6 (HCV-6) is the highest with 31 subtypes, and this genotype is prevalent in Southeast Asia. In this study, we investigated 160 individuals with chronic hepatitis C in Yunnan Province, China. Using reverse transcription (RT)-PCR and Sanger sequencing, 147 cases were successfully amplified and genotyped as 3b (4.9%), 3a (19.73%), 6n (12.24%), 1b (7.48%), 2a (6.12%), 6a (2.04%), 1a (0.68%), 6v (0.68%), and 6xa (0.68%), with eight sequences remaining unclassified. Subsequently, the eight nearly full-length genomes were successfully amplified and analyzed. The eight complete coding sequences formed a phylogenetic group that was distinct from the previously assigned HCV-6 subtypes and clustered with two previously unnamed HCV-6 sequences. Furthermore, Simplot analysis showed no recombination and the

Indexed as

AdultAntiviral AgentsCarbamatesChinaDrug CombinationsEvolution, MolecularFemaleGenotypeHepacivirusHepatitis C, ChronicHeterocyclic Compounds, 4 or More RingsHumansMaleMiddle AgedPhylogenySofosbuvirAntiviral AgentsCarbamatesDrug CombinationsHeterocyclic Compounds, 4 or More RingsSofosbuvirsofosbuvir-velpatasvir drug combinationDAAfollow-uphepatitis C virusnovel subtypeRASresistance-associated substitutions

Identifiers

PMID34479413
PMCPMC8552672

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.