Evidence map›Paper›PMID 34476522›Full record

ArticleAnalytical and bioanalytical chemistry2021

Mass spectrometric characterization of cyclic dinucleotides (CDNs) in vivo.

Andrea Annibal, Roberto Ripa, Eugen Ballhysa, Christian Latza, Nadine Hochhard, Adam Antebi

Open access · hybridAbstract read
In one paragraph

Article in Analytical and bioanalytical chemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. At the Crossroad of Nucleotide Dynamics and Protein Synthesis in Bacteria.Microbiology and molecular biology reviews : MMBR · 2023
    Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Andrea AnnibalMax Planck Institute for Biology of Ageing, Cologne, Germany. aannibal@age.mpg.de.ORCID http://orcid.org/0000-0003-4311-5417
Roberto RipaMax Planck Institute for Biology of Ageing, Cologne, Germany.
Eugen BallhysaMax Planck Institute for Biology of Ageing, Cologne, Germany.
Christian LatzaMax Planck Institute for Biology of Ageing, Cologne, Germany.
Nadine HochhardMax Planck Institute for Biology of Ageing, Cologne, Germany.
Adam AntebiMax Planck Institute for Biology of Ageing, Cologne, Germany. aantebi@age.mpg.de.
Max Planck Institute for Biology of Ageing · DEUniversity of Cologne · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cyclic dinucleotides (CDNs) are key secondary messenger molecules produced by cyclic dinucleotide synthases that trigger various cellular signaling cascades from bacteria to vertebrates. In mammals, cyclic GMP-AMP synthase (cGAS) has been shown to bind to intracellular DNA and catalyze the production of the dinucleotide 2'3' cGAMP, which signals downstream effectors to regulate immune function, interferon signaling, and the antiviral response. Despite the importance of CDNs, sensitive and accurate methods to measure their levels in vivo are lacking. Here, we report a novel LC-MS/MS method to quantify CDNs in vivo. We characterized the mass spectrometric behavior of four different biologically relevant CDNs (c-di-AMP, c-di-GMP, 3'3' cGAMP, 2'3' cGAMP) and provided a means of visually representing fragmentation resulting from collision-induced dissociation at different energies using collision energy breakdown graphs. We then validated the method and quantified CDNs in two in vivo systems, the bacteria Escherichia coli OP50 and the killifish Nothobranchius furzeri. We found that optimization of LC-MS/MS parameters is crucial to sensitivity and accuracy. These technical advances should help illuminate physiological and pathological roles of these CDNs in in vivo settings. Graphical abstract.

Indexed as

AnimalsChromatography, LiquidCyclic GMPDinucleoside PhosphatesEscherichia coliFundulidaeNucleotides, CyclicTandem Mass Spectrometrybis(3',5')-cyclic diguanylic acidcyclic diadenosine phosphateCyclic GMPcyclic guanosine monophosphate-adenosine monophosphateDinucleoside PhosphatesNucleotides, Cyclic2′3′ cGAMPcGASMass spectrometryNothobranchius furzeri

Identifiers

PMID34476522
PMCPMC8412381
OpenAlexW3196587853

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.