Evidence map›Paper›PMID 34475461›Full record

ArticleScientific reports2021

Indicators of the molecular pathogenesis of virulent Newcastle disease virus in chickens revealed by transcriptomic profiling of spleen.

Mohammad Rabiei, Wai Yee Low, Yan Ren, Mohamad Indro Cahyono, Phuong Thi Kim Doan, Indi Dharmayanti, Eleonora Dal Grande, Farhid Hemmatzadeh

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 35 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 3 countries.

Mohammad RabieiSchool of Animal and Veterinary Sciences, The University of Adelaide, Adelaide, Australia. mohammad.rabiei@adelaide.edu.au.
Wai Yee LowThe Davies Research Centre, School of Animal and Veterinary Sciences, The University of Adelaide, Adelaide, Australia.
Yan RenThe Davies Research Centre, School of Animal and Veterinary Sciences, The University of Adelaide, Adelaide, Australia.
Mohamad Indro CahyonoIndonesian Research Centre for Veterinary Science, Bogor, West Java, Indonesia.
Phuong Thi Kim DoanSchool of Animal and Veterinary Sciences, The University of Adelaide, Adelaide, Australia.
Indi DharmayantiIndonesian Research Centre for Veterinary Science, Bogor, West Java, Indonesia.
Eleonora Dal GrandeSchool of Animal and Veterinary Sciences, The University of Adelaide, Adelaide, Australia.
Farhid HemmatzadehSchool of Animal and Veterinary Sciences, The University of Adelaide, Adelaide, Australia.
University of Adelaide · AUCenter for Indonesian Veterinary Analytical Studies · ID

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Newcastle disease virus (NDV) has caused significant outbreaks in South-East Asia, particularly in Indonesia in recent years. Recently emerged genotype VII NDVs (NDV-GVII) have shifted their tropism from gastrointestinal/respiratory tropism to a lymphotropic virus, invading lymphoid organs including spleen and bursa of Fabricius to cause profound lymphoid depletion. In this study, we aimed to identify candidate genes and biological pathways that contribute to the disease caused by this velogenic NDV-GVII. A transcriptomic analysis based on RNA-Seq of spleen was performed in chickens challenged with NDV-GVII and a control group. In total, 6361 genes were differentially expressed that included 3506 up-regulated genes and 2855 down-regulated genes. Real-Time PCR of ten selected genes validated the RNA-Seq results as the correlation between them is 0.98. Functional and network analysis of Differentially Expressed Genes (DEGs) showed altered regulation of ElF2 signalling, mTOR signalling, proliferation of cells of the lymphoid system, signalling by Rho family GTPases and synaptogenesis signalling in spleen. We have also identified modified expression of IFIT5, PI3K, AGT and PLP1 genes in NDV-GVII infected chickens. Our findings in activation of autophagy-mediated cell death, lymphotropic and synaptogenesis signalling pathways provide new insights into the molecular pathogenesis of this newly emerged NDV-GVII.

Indexed as

AnimalsAvian ProteinsChickensIndonesiaNewcastle DiseaseNewcastle disease virusPoultry DiseasesSpleenTranscriptomeAvian Proteins

Identifiers

PMID34475461
PMCPMC8413450
OpenAlexW3197996170

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.