ArticleScientific data2021
Cydrasil 3, a curated 16S rRNA gene reference package and web app for cyanobacterial phylogenetic placement.
Article in Scientific data, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
20 citing papers in PubMed, 43 citations in OpenAlex.
- Assessing the implementation of crustivoltaics inApplied and environmental microbiology · 2026Article
- Comparing Aquatic Environmental DNA, Microscopy and Sedimentary DNA to Investigate Cyanobacterial Community Dynamics Across a Trophic Gradient.Microbial ecology · 2026Article
- Caught Between Invasions: Community Structure and Environmental Drivers of Cyanobacteria in a Vulnerable Post-glacial Lake Region.Microbial ecology · 2026Article
- Unanticipated similarities and expected differences in the taxonomic composition and potential toxicity of cyanobacteria in biological soil crusts across hot and cold deserts.Frontiers in microbiology · 2026Article
- Comparative genomics and tadpole intestinal metabarcoding suggest a potential cyanobacteria-amphibian trophic link in hot-spring ecosystems.Frontiers in microbiology · 2026Article
- A thallus-forming N-fixing fungus-cyanobacterium symbiosis from subtropical forests.Science advances · 2025Article
- Scalable method for exploring phylogenetic placement uncertainty with custom visualizations usingiMeta · 2025Article
- Genome-wide insights into the evolutionary history of conserved photosynthetic NDH-1 in cyanobacteria.Frontiers in plant science · 2025Article
- Soil phototroph community resilience comes from down under.Frontiers in microbiology · 2025Article
- Metabolomic Analysis and Antiviral Screening of a Marine Algae Library Yield Jobosic Acid (2,5-Dimethyltetradecanoic Acid) as a Selective Inhibitor of SARS-CoV-2.Journal of natural products · 2024Article
- 16S rRNA gene amplicon sequencing data from an Australian wastewater treatment plant.Microbiology resource announcements · 2024Article
- Microbiome analysis revealsApplied and environmental microbiology · 2024Article
- Environmental conditions play a key role in controlling the composition and diversity of Colombian biocrust microbiomes.Frontiers in microbiology · 2024Article
- Cultivating Resilience in Dryland Soils: An Assisted Migration Approach to Biological Soil Crust Restoration.Microorganisms · 2023Article
- Salinity matters the most: How environmental factors shape the diversity and structure of cyanobacterial mat communities in high altitude arid ecosystems.Frontiers in microbiology · 2023Article
- Landscape characteristics shape surface soil microbiomes in the Chihuahuan Desert.Frontiers in microbiology · 2023Article
- Global distribution and diversity of marine euendolithic cyanobacteria.Journal of phycology · 2022Article
- Spatial self-segregation of pioneer cyanobacterial species drives microbiome organization in biocrusts.ISME communications · 2022Article
- Climate dictates microbial community composition and diversity in Australian biological soil crusts (biocrusts).Environmental microbiology · 2022Article
- High impact of bacterial predation on cyanobacteria in soil biocrusts.Nature communications · 2022Article
Corrections and comments
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Authors and funding
3 authors at 1 institution in 1 country.
Funding
Abstract
Cyanobacteria are a widespread and important bacterial phylum, responsible for a significant portion of global carbon and nitrogen fixation. Unfortunately, reliable and accurate automated classification of cyanobacterial 16S rRNA gene sequences is muddled by conflicting systematic frameworks, inconsistent taxonomic definitions (including the phylum itself), and database errors. To address this, we introduce Cydrasil 3 ( https://www.cydrasil.org ), a curated 16S rRNA gene reference package, database, and web application designed to provide a full phylogenetic perspective for cyanobacterial systematics and routine identification. Cydrasil 3 contains over 1300 manually curated sequences longer than 1100 base pairs and can be used for phylogenetic placement or as a reference sequence set for de novo phylogenetic reconstructions. The web application (utilizing PaPaRA and EPA-ng) can place thousands of sequences into the reference tree and has detailed instructions on how to analyze results. While the Cydrasil web application offers no taxonomic assignments, it instead provides phylogenetic placement, as well as a searchable database with curation notes and metadata, and a mechanism for community feedback.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.